BaNG - Blaxter Nematode and Neglected Genomics
  The C. elegans genome
     Introduction to the genome of a model nematode
       Mark Blaxter at the Institute of Evolutionary Biology, University of Edinburgh
How was the genome sequenced?
Annotating the genome
 


C. elegans
Chromosome Statistics

(from the 1998 genome sequiencing paper)

Distribution of coding genes and patterns of conservation

Chromosome

Genetic compartment

Size (Mb)

Size (Mb)

Protein Genes

Protein gene density per kb

tRNA genes

tRNA pseudogenes

coding %

% of protein genes with EST match

% of protein coding genes with a database match

I

L

13.86

3.29

649

5.06

7

2

21.59

57.0

53.9

C

5.59

1171

4.77

34

4

31.65

52.9

52.1

R

4.98

983

5.06

33

2

25.00

43.4

40.8

II

L

14.72

3.83

1049

3.65

29

13

29.00

22.7

26.9

C

7.93

1719

4.61

38

6

29.68

49.7

49.8

R

2.96

491

6.03

16

5

19.89

43.5

39.9

III

L

12.77

3.30

612

5.40

31

14

20.60

44.2

42.1

C

4.98

1100

4.52

42

0

32.21

53.5

53.5

R

4.49

796

5.66

21

3

23.91

53.1

50.2

IV

L

16.14

5.44

1050

5.17

38

16

20.87

39.9

39.7

C

6.51

1422

4.58

20

3

29.69

45.7

50.3

R

4.19

622

6.73

26

2

16.50

36.6

40.7

V

L

20.82

6.19

1491

4.15

17

4

27.00

22.0

33.0

C

6.84

1573

4.34

37

0

29.40

32.2

43.8

R

7.79

1018

4.36

152

94

25.50

19.5

28.8

X

17.22

2631

6.54

362

33

19.8

40.9

43.3

Total

95.53

19141

4.98

877

198

27

38.9

 

These pages were written by Mark Blaxter and last updated in early 2007.
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