BaNG - Blaxter Nematode and Neglected Genomics
  The C. elegans genome
     Introduction to the genome of a model nematode
       Mark Blaxter at the Institute of Evolutionary Biology, University of Edinburgh
How was the genome sequenced?
Annotating the genome
 

C. elegans protein families:
the 20 commonest protein domains in the proteome

from the C. elegans genome consortium paper in the December 11th 1998 Science

number

description

650

seven-transmembrane spanning chemoreceptor

410

eukaryotic protein kinase domain

240

two domain, C4 type zinc finger

170

collagen

140

seven-transmembrane spanning rhodopsin-family receptor

130

C2H2 type zinc finger

120

C-type lectin

100

RNA recognition motif

90

C3HC4 type (RING finger) zinc fingers

90

protein tyrosine phosphatase

90

ankyrin repeat

90

WD domain G-beta repeat

80

homeobox domain

80

neurotransmitter gated ion channel

80

cytochrome P450

80

conserved C-terminal helicase

80

short chain and alcohol dehydrogenases

70

UDP-glucoronosyl and UDP-glucosyl transferases

70

EGF-like domain

70

immunoglobulin superfamily

These pages were written by Mark Blaxter and last updated in early 2007.
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