Web interface for the ARTHROPODA PartiGene database

wwwPartiGene
Vogler Lab Datasets

A web interface for the
BaNG database of Hexapod species ESTs
focussing on Alfried Vogler's recent EST datasets, mainly from beetles
Analysed using PartiGene
Curated by Mark Blaxter

Please contact Mark Blaxter if you would like prepublication access to any of these analyses. Please see below for data sources and image credits.

Retrieve a specific cluster

Enter a PartiGene-style cluster ID (e.g. PHC00003)

Search the BLAST annotation

Select organism

Text Minimum blast score

To view all clusters for a species just leave the text box blank

Sources of data and images

Image

ID

Species

Order

Class

Source of EST data

Number of ESTs

Number of Clusters

Source of image

AAC

Amblyomma americanum

Ixodida

Chelicerata

University of Oklahoma's Advanced Center for Genome Technology

Publications:
Hill CA, Gutierrez JA, "Analysis of the expressed genome of the lone star tick, Amblyomma americanum (Acari: Ixodidae) using an expressed sequence tag approach.", Microb Comp Genomics, 2000;5(2):89-101

http://www.cdc.gov/ncidod/dvbid/ images/amblyomma-americanum.jpg

AMC

Apis mellifera

Hymenoptera

Hexapoda

Department of Entomology and Neuroscience Program, University of Illinois, Urbana

Publications:
Whitfield CW et al., Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee., Genome Res, 2002 Apr;12(4):555-66

http://www.funet.fi/pub/sci/bio/ life/insecta/hymenoptera/apocrita/ apidae/apis/mellifera-2.jpg

AVC

Amblyomma variegatum

Ixodida

Chelicerata

TIGR

Publications:
Nene,V., et al. AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum. Int. J. Parasitol. 32 (12): 1447-1456 2002

http://www.nhc.ed.ac.uk/images/ collections/ticks/image12.jpg

BOC

Boophilus (Rhipicephalus) microplus

Ixodida

Chelicerata

TIGR

Publications:
Guerrereo et al. BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick. Insect Biochem. Mol. Biol. 35 (6): 585-595 2005

http://www.nhc.ed.ac.uk/images/ collections/ticks/hard/image017.jpg

CSC

Cupiennius salei

Aranea

Chelicerata

BaNG

unpublished EST dataset from Martin Jones, Wim Damen and Mark Blaxter

http://www.wissenschaft-online.de/ sixcms/media.php/591/18spinne.jpg

EPC

Eurydice pulchra

Isopoda

Crustacea

BaNG

unpublished EST dataset from Mark Blaxter

http://www.glaucus.org.uk/bilgebug.jpg

ISC

Ixodes scapularis

Ixodida

Chelicerata

Unpublished Genbank Submissions An updated catalogue of salivary gland transcripts from Ixodes scapularis ticks Ribeiro,J.M.C., Alarcon-Chaidez,F., Mans,B., Francischetti,I.M., Mather,T., Valenzuela,J.G, Wikel,S.K., Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases 2005.

http://www.biology.ox.ac.uk/ index_files/Tick.jpg

MGC

Mesobuthus gibbosus

Scorpiones

Chelicerata

BaNG

unpublished EST dataset from Benjamin Gantenbein and Mark Blaxter

from Benjamin Gantenbein

OFC

Oncopeltus fasciatus

Hemiptera

Hexapoda

BaNG

unpublished EST dataset from Cassandra Extavour and Mark Blaxter

http://www.cirrusimage.com/ Bugs/large_milkweed_01.jpg

OPC

Ornithodoros porcinus

Ixodida

Chelicerata

Unpublished Genbank Submissions Sequence analysis of Ornithodorus porcinus porcinus whole tick cDNA libraries. Neilan,J.G., Kutish,G.F., Lu,Z., Burrage,T.G., Zsak,A., Rock,D.L., Plum Island Animal Disease Center, US Department of Agriculture, Agricultural Research Service 2003

http://www.vet.uga.edu/vpp/IVM/ ENG/ticks/images/ornithodoros.jpg

PHC

Parhyale hawaiiensis

Amphipoda

Crustacea

BaNG

unpublished EST dataset from Cassandra Extavour and Mark Blaxter

http://www.eb.tuebingen.mpg.de/ gerberding/stages.jpg

POC

Psoroptes ovis

Astigmata

Chelicerata

BaNG

Publications:
Kenyon, F et al. Expressed sequence tag survey of gene expression in the scab mite Psoroptes ovis --allergens, proteases and free-radical scavengers. Parasitology 126 (Pt 5): 451-460 2003

http://www.defra.gov.uk/corporate/vla/ comserv/images/comserv-para3.jpg

RAC

Rhipicephalus appendiculatus

Ixodida

Chelicerata

Vector Genomics, International Livestock Research Institute, Nairobi, Kenya

Publications:
Lambson, B.E. et al. Identification of candidate sialome components expressed in ixodid tick salivary glands using secretion signal complementation in mammalian cells. Insect Mol. Biol. 14 (4): 403-414 2005

http://pharyngula.org/images/ strig_adult.jpg

SCC

Sarcoptes scabei

Astigmata

Chelicerata

Publications:
Ljunggren EL, Nilsson D, Mattsson JG. Expressed sequence tag analysis of Sarcoptes scabiei. Parasitology.2003 Aug;127(Pt 2):1

http://parasite.org.au/images/parasites/ Arthropoda/Sarcoptes_scabeiD.jpg

STC

Strigamia maritima

Geophilomorpha

Myriapoda

BaNG

unpublished EST dataset from Ariel Chipman and Mark Blaxter

http://pharyngula.org/images strig_adult.jpg

	Vogler Lab Datasets A web interface for the BaNG database of Hexapod species ESTs focussing on Alfried Vogler's recent EST datasets, mainly from beetles Analysed using PartiGene Curated by Mark Blaxter
Please contact Mark Blaxter if you would like prepublication access to any of these analyses. Please see below for data sources and image credits.

Retrieve a specific cluster
Enter a PartiGene-style cluster ID (e.g. PHC00003)

Image	ID	Species	Order	Class	Source of EST data	Number of ESTs	Number of Clusters	Source of image
	AAC	Amblyomma americanum	Ixodida	Chelicerata	University of Oklahoma's Advanced Center for Genome Technology Publications: Hill CA, Gutierrez JA, "Analysis of the expressed genome of the lone star tick, Amblyomma americanum (Acari: Ixodidae) using an expressed sequence tag approach.", Microb Comp Genomics, 2000;5(2):89-101			http://www.cdc.gov/ncidod/dvbid/ images/amblyomma-americanum.jpg
	AMC	Apis mellifera	Hymenoptera	Hexapoda	Department of Entomology and Neuroscience Program, University of Illinois, Urbana Publications: Whitfield CW et al., Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee., Genome Res, 2002 Apr;12(4):555-66			http://www.funet.fi/pub/sci/bio/ life/insecta/hymenoptera/apocrita/ apidae/apis/mellifera-2.jpg
	AVC	Amblyomma variegatum	Ixodida	Chelicerata	TIGR Publications: Nene,V., et al. AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum. Int. J. Parasitol. 32 (12): 1447-1456 2002			http://www.nhc.ed.ac.uk/images/ collections/ticks/image12.jpg
	BOC	Boophilus (Rhipicephalus) microplus	Ixodida	Chelicerata	TIGR Publications: Guerrereo et al. BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick. Insect Biochem. Mol. Biol. 35 (6): 585-595 2005			http://www.nhc.ed.ac.uk/images/ collections/ticks/hard/image017.jpg
	CSC	Cupiennius salei	Aranea	Chelicerata	BaNG unpublished EST dataset from Martin Jones, Wim Damen and Mark Blaxter			http://www.wissenschaft-online.de/ sixcms/media.php/591/18spinne.jpg
	EPC	Eurydice pulchra	Isopoda	Crustacea	BaNG unpublished EST dataset from Mark Blaxter			http://www.glaucus.org.uk/bilgebug.jpg
	ISC	Ixodes scapularis	Ixodida	Chelicerata	Unpublished Genbank Submissions An updated catalogue of salivary gland transcripts from Ixodes scapularis ticks Ribeiro,J.M.C., Alarcon-Chaidez,F., Mans,B., Francischetti,I.M., Mather,T., Valenzuela,J.G, Wikel,S.K., Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases 2005.			http://www.biology.ox.ac.uk/ index_files/Tick.jpg
	MGC	Mesobuthus gibbosus	Scorpiones	Chelicerata	BaNG unpublished EST dataset from Benjamin Gantenbein and Mark Blaxter			from Benjamin Gantenbein
	OFC	Oncopeltus fasciatus	Hemiptera	Hexapoda	BaNG unpublished EST dataset from Cassandra Extavour and Mark Blaxter			http://www.cirrusimage.com/ Bugs/large_milkweed_01.jpg
	OPC	Ornithodoros porcinus	Ixodida	Chelicerata	Unpublished Genbank Submissions Sequence analysis of Ornithodorus porcinus porcinus whole tick cDNA libraries. Neilan,J.G., Kutish,G.F., Lu,Z., Burrage,T.G., Zsak,A., Rock,D.L., Plum Island Animal Disease Center, US Department of Agriculture, Agricultural Research Service 2003			http://www.vet.uga.edu/vpp/IVM/ ENG/ticks/images/ornithodoros.jpg
	PHC	Parhyale hawaiiensis	Amphipoda	Crustacea	BaNG unpublished EST dataset from Cassandra Extavour and Mark Blaxter			http://www.eb.tuebingen.mpg.de/ gerberding/stages.jpg
	POC	Psoroptes ovis	Astigmata	Chelicerata	BaNG Publications: Kenyon, F et al. Expressed sequence tag survey of gene expression in the scab mite Psoroptes ovis --allergens, proteases and free-radical scavengers. Parasitology 126 (Pt 5): 451-460 2003			http://www.defra.gov.uk/corporate/vla/ comserv/images/comserv-para3.jpg
	RAC	Rhipicephalus appendiculatus	Ixodida	Chelicerata	Vector Genomics, International Livestock Research Institute, Nairobi, Kenya Publications: Lambson, B.E. et al. Identification of candidate sialome components expressed in ixodid tick salivary glands using secretion signal complementation in mammalian cells. Insect Mol. Biol. 14 (4): 403-414 2005			http://pharyngula.org/images/ strig_adult.jpg
	SCC	Sarcoptes scabei	Astigmata	Chelicerata	Publications: Ljunggren EL, Nilsson D, Mattsson JG. Expressed sequence tag analysis of Sarcoptes scabiei. Parasitology.2003 Aug;127(Pt 2):1			http://parasite.org.au/images/parasites/ Arthropoda/Sarcoptes_scabeiD.jpg
	STC	Strigamia maritima	Geophilomorpha	Myriapoda	BaNG unpublished EST dataset from Ariel Chipman and Mark Blaxter			http://pharyngula.org/images strig_adult.jpg