|
BaNG Nematode and Neglected Genomics |
 |
|
| The Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh | ||
|
PartiGene "ARTHROPODA" database Sources of data and images
The sequence data analysed in this database derives either from GenBank/EMBL/DDBJ's dbEST section, or from currently unpublished datasets generated in Edinburgh in collaboration with colleagues. While some of the dbEST-derived datasets have been formally published (see references below), many have not, and before exploiting these users are strongly encouraged to contact the submitting authors. The images have been identified from the www and their sources are given below. If you would like to offer a better image, or pass comment on our use of an image, please do email the curator, Mark Blaxter. (Note: this page is not yet complete: some organisms are not listed)
Current database version 2.0, 24 March 2006 26 species, 230,980 ESTs and 81,888 putative genes ("clusters").
Image
ID
Species
Order Class Source of EST data
Number of ESTs Number of Clusters Source of image
AAC
Amblyomma americanum
University of Oklahoma's Advanced Center for Genome Technology
Publications:
Hill CA, Gutierrez JA, "Analysis of the expressed genome of the lone star tick, Amblyomma americanum (Acari: Ixodidae) using an expressed sequence tag approach.", Microb Comp Genomics, 2000;5(2):89-1016322 2590 http://www.cdc.gov/ ncidod/dvbid/images/ amblyomma-americanum.jpg
AMC
Apis mellifera
Department of Entomology and Neuroscience Program, University of Illinois, Urbana
Publications:
Whitfield CW et al., "Annotated expressed sequence tags and cDNA microarrays for studies of brain and behavior in the honey bee.", Genome Res, 2002 Apr;12(4):555-6620558 11028 http://www.funet.fi/pub/ sci/bio/life/insecta/hymenoptera/ apocrita/apidae/apis/mellifera-2.jpg
APC
Acrthiosiphon pisum
(to be added)
44824 12306 (to be added)
ARC
Artemia franciscana
(to be added)
334 266 http://www.brineshrimpdirect.com/ contentimages/ brineshrimp_photo.jpg
AVC
Amblyomma variegatum
Publications:
Nene,V., et al. AvGI, an index of genes transcribed in the salivary glands of the ixodid tick Amblyomma variegatum. Int. J. Parasitol. 32 (12): 1447-1456 20024003 2098 http://www.nhc.ed.ac.uk/ images/collections/ ticks/image12.jpg
BOC
Boophilus (Ripicephalus) microplus
Publications:
Guerrereo et al. BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick. Insect Biochem. Mol. Biol. 35 (6): 585-595 200520582 8365 http://www.nhc.ed.ac.uk/ images/collections/ticks/ hard/image017.jpg
CAC
Callinectes sapidus
(to be added)
10573 2207 http://www.dnr.sc.gov/marine/ sertc/images/photo%20gallery/ C%20sapidus.jpg
CMC
Carcinus maenas
(to be added)
15595 4440 http://www.californiabiota.com/ cabiota/carcinus_maenas_1.jpg
CSC
Cupiennius salei
unpublished EST dataset from Martin Jones, Wim Damen and Mark Blaxter
296 246 http://www.wissenschaft-online.de/ sixcms/media.php/591/18spinne.jpg
DMC
Daphnia magna
(to be added)
11684 4574 http://www.ams.rdg.ac.uk/zoology/ callaghan/img1.jpg
DXC
Daphnia pulex
(to be added)
12313 4979 (to be added)
EPC
Eurydice pulchra
unpublished EST dataset from Mark Blaxter
1026 554 http://www.glaucus.org.uk/ bilgebug.jpg
HOC
Homarus americanus
(to be added)
8641 6102 http://www.ifremer.fr/envlit/ actualite/img/americanus.gif
ISC
Ixodes scapularis
Unpublished Genbank Submissions An updated catalogue of salivary gland transcripts from Ixodes scapularis ticks Ribeiro,J.M.C., Alarcon-Chaidez,F., Mans,B., Francischetti,I.M., Mather,T., Valenzuela,J.G, Wikel,S.K., Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases 2005.
8298 3337 http://www.biology.ox.ac.uk/ index_files/Tick.jpg
LFC
Litopenaeus setiferus
(to be added)
1052 523 http://www.penbase.immunaqua.com/ images/ Shrimp_Litopenaeus_setiferus.jpg
LVC
Litopenaeus vannamme
(to be added)
7147 3340 http://upload.wikimedia.org/ wikipedia/ en/thumb/c/ c5/Penaeus_vannamei.jpg /200px-Penaeus_vannamei.jpg
MGC
Mesobuthus gibbosus
unpublished EST dataset from Benjamin Gantenbein and Mark Blaxter
982 536 from Benjamin Gantenbein
MJC
Marsupenaeus japonicus
(to be added)
3164 1837 http://www.ciesm.org/atlas/ pix/photos/MarsupeneusP.jpg
OFC
Oncopeltus fasciatus
unpublished EST dataset from Cassandra Extavour and Mark Blaxter
647 398 http://www.cirrusimage.com/ Bugs/large_milkweed_01.jpg
OPC
Ornithodoros porcinus
Unpublished Genbank Submissions Sequence analysis of Ornithodorus porcinus porcinus whole tick cDNA libraries. Neilan,J.G., Kutish,G.F., Lu,Z., Burrage,T.G., Zsak,A., Rock,D.L., Plum Island Animal Disease Center, US Department of Agriculture, Agricultural Research Service 2003
1458 762 http://www.vet.uga.edu/ vpp/IVM/ENG/ticks/images/ ornithodoros.jpg
PHC
Parhyale hawaiiensis
unpublished EST dataset from Cassandra Extavour and Mark Blaxter
1416 1013 http://www.eb.tuebingen.mpg.de/ gerberding/stages.jpg
PMC
Penaeus monodon
(to be added)
2258 1235 http://nis.gsmfc.org/photo/ Penaeus_monodon.jpg
POC
Psoroptes ovis
Publications:
Kenyon, F et al. Expressed sequence tag survey of gene expression in the scab mite Psoroptes ovis --allergens, proteases and free-radical scavengers. Parasitology 126 (Pt 5): 451-460 2003508 281 http://www.defra.gov.uk/ corporate/vla/comserv/ images/comserv-para3.jpg
SCC
Sarcoptes scabei
Publications:
Ljunggren EL, Nilsson D, Mattsson JG. Expressed sequence tag analysis of Sarcoptes scabiei. Parasitology.2003 Aug;127(Pt 2):119000 7902 http://parasite.org.au/images/ parasites/Arthropoda/ Sarcoptes_scabeiD.jpg
STC
Strigamia maritima
unpublished EST dataset from Ariel Chipman and Mark Blaxter
1085 768 from Ariel Chipman
RAC
Rhipicephalus appendiculatus
Vector Genomics, International Livestock Research Institute, Nairobi, Kenya
Publications:
Lambson, B.E. et al. Identification of candidate sialome components expressed in ixodid tick salivary glands using secretion signal complementation in mammalian cells. Insect Mol. Biol. 14 (4): 403-414 2005214 201 http://www.nhc.ed.ac.uk/ images/collections/ticks/ hard/image047.jpg
...other interesting things... 
The pond snail Lymnaea stagnalis. See the MOLLUSCA database for analyses of ESTs from this and many other snails and bivalves. |