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Select organism Ambystoma mexicanum, the axolotl Ambystoma tigrinum, the tiger salamander
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ABOUT THIS DATABASE
EST and mRNA data for these two salamander species was downloaded from GenBank dbEST on 10 December 2006, and clustered using the PartiGene suite of tools. Blast searches (versus a database of eukaryotic rRNAs, against the UniProt database (Nov 2006) and the two speices versus each other, were carried out 10 December to 12 December 2006. If you would like a copy of the database, or the cluster consensus sequences, please contact mark.blaxter_at_ed.ac.uk
Ambystoma mexicanum image from www.bogleech.com/pokemonzoo.html AXC 539 sequences <= 100 bp in length were removed 33075 sequences were clustered
SUMMARY OF CLUSTERING FOR AXC ============================================================= Number of sequences = 33075 Total number of clusters = 10436 Number of clusters with 1 member = 7179 Number of clusters with >1 member (derived from 25896 sequences) = 3257 =============================================================
Ambystoma tigrinum tigrinum image from www.rieo.net/amph/saramand/imori/amby/tiger.htm ATC 185 sequences <= 100 bp in length were removed 20311 sequences were clustered
SUMMARY OF CLUSTERING FOR ATC ============================================================= Number of sequences = 20311 Total number of clusters = 10567 Number of clusters with 1 member = 7486 Number of clusters with >1 member (derived from 12825 sequences) = 3081 =============================================================