wwwPartiGene

Strongyloides ratti GSS

A web interface for the
Strongyloides ratti genome survey sequence
PartiGene database
Curated by Mark Blaxter


Retrieve a specific cluster


Enter a PartiGene-style GSS cluster ID (e.g. SRC00003)

Search the BLAST annotation

Select organism

Text      Minimum e value

To view all clusters for an organism just leave the text box blank

SUMMARY OF CLUSTERING FOR SRC
=======================================================
Number of sequences = 19637
Total number of clusters = 11653
Number of clusters with 1 member = 8583
Number of clusters with > 1 member
derived from 11054 sequences = 3070
=======================================================

The following BLAST searches have been carried out

Name in database, Content, BLAST programme, cutoff used
SREST, the Strongyloides ratti EST clusters from NemBase, blastn, e-50
SSEST, the Strongyloides stercoralis EST clusters from NemBase, tblastx, e-8
Caeno, a database of all Caenorhabditis briggsae and Caenorhabditis elegans proteins, blastx, e-8
nempe, the NemPep database (all proteins predicted from NemBase EST clusters) version 3, blastx, e-8
(soon to come is a blast versus UniProt nr).