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BaNG Nematode and Neglected Genomics |
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| The Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh | ||
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A tool for generating partial gemomes
Current version 3.0.5 released on 17 October 2008
User guide Download Publications Feedback Change log Contact us PartiGene is part of the Edinburgh-EGTDC developed EST-software pipeline at the moment consisting of trace2dbEST, PartiGene, wwwPartiGene, port4EST and annot8r. PartiGene is a menu-driven, multi-step software tool which takes sequences (usually ESTs) and creates a dataabase of a non-redundant set of sequence objects (putative genes) which we term a partial genome. Version 3.0.5 corrects some bugs, and unifies some of the look-and-feel. The user guides are still v3.0.3, and are valid.
- 1. Setup
- 2. Processing sequences
- 3. Creating and updating a relational database
- 4. Post database analysis
For further deatails please see the User guide.
...other interesting things... 
The pig-parasitic nematode Ascaris suum. Ascarids are gut and tissue parasites of a wide range of vertebrates, including humans. This species infects pigs worldwide, and can cause human disease; it is used as a model for the human parasite A. lumbricoides to which it is very closely related. See NEMBASE3 for analyses of ESTs from this parasite and many other nematodes. |
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