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BaNG Nematode and Neglected Genomics |
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| The Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh | ||
A tool for generating partial gemomes
Current version 3.0.3 released on 09 August 2006
User guide Download Publications Feedback Change log Contact us PartiGene is part of the Edinburgh-EGTDC developed EST-software pipeline at the moment consisting of trace2dbEST, PartiGene, wwwPartiGene, port4EST and annot8r. PartiGene is a menu-driven, multi-step software tool which takes sequences (usually ESTs) and creates a dataabase of a non-redundant set of sequence objects (putative genes) which we term a partial genome.
- 1. Setup
- 2. Processing sequences
- 3. Creating and updating a relational database
- 4. Post database analysis
For further deatails please see the User guide.
...other interesting things... Blaxter Lab Publications 2006 
Operon Evolution in Nematodes Operons are a common mode of gene organisation in Caenorhabditis elegans. We have traced the origin of operonic gene organisation, and of trans-splicing in a wide range of nematodes. Guiliano DB, Blaxter ML (2006) Operon conservation and the evolution of trans-splicing in the phylum Nematoda. PLoS Genet 2(11): e198. doi:10.1371/journal.pgen.0020198 . |
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