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BaNG Nematode and Neglected Genomics |
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| The Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh | ||
annot8r
A tool for Gene Ontology, KEGG biochemical pathways and Enzyme Commission EC number annotation of nucleotide and peptide sequences
Ralf Schmid and Mark Blaxter
Current version 1.1 released on 18 December 2007
User guide Download Feedback Contact us annot8r is a tool for the annotation of protein or nucleotide sequences from non model organisms with GO terms, EC numbers and KEGG pathways. The annotation is based on BLAST similarity searches against annotated subsets of EMBL UniProt from which sequences with non-informative entries have been removed. GO, EC and KEGG annotations are saved as flat files and in a relational postgreSQL database to allow for more sophisticated searches within the results.
For further deatails please see the User guide (available as PDF or Word .doc; Includes frequently asked questions and changes made to the script)
see also annot8r_physprop, a tool for adding physical property annotations to peptides.
...other interesting things... 
The plant-parasitic nematode Globodera pallida . Plant parasitic nematodes cause major economic losses worldwide. Globodera pallida parasitises potato . See NEMBASE3 for analyses of ESTs from this parasite and many other nematodes. |