nematodes.org - Bioinformatics

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, The University of Edinburgh

A tool for generating partial genomes

trace2seq

Turning sequence chromatograph traces into sequences.

Current version 1.0.1 released on 17 April 2008

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trace2seq process raw sequencing chromatograph trace files into quality-checked sequences. trace2seq is a PERL script, designed to be run friom the command line. It has nbeen tested on Linux and Mac OSX computers. It is derived from our trace2dbEST EST processing tool. trace2seq makes use of other software (available free under academic licence) that you will need to have installed, namely phred and cross_match.

Website Highlight

The plant-parasitic nematode Meloidogyne incognita .
Plant parasitic nematodes cause major economic losses worldwide. Meloidogyne incognita parasitises cotton and other crops . See NEMBASE4 for analyses of ESTs from this parasite and many other nematodes.

nematodes.org - Bioinformatics

Nematode & Neglected Genomics @ The Blaxter Lab, Institute of Evolutionary Biology, The University of Edinburgh

trace2seq

Website Highlight

The plant-parasitic nematode Meloidogyne incognita . Plant parasitic nematodes cause major economic losses worldwide. Meloidogyne incognita parasitises cotton and other crops . See NEMBASE4 for analyses of ESTs from this parasite and many other nematodes.

[nematodes.org v4.0] the content of these pages is copyright Mark Blaxter and colleagues. Contact the webmaster if there are problems.

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, The University of Edinburgh

The plant-parasitic nematode Meloidogyne incognita .
Plant parasitic nematodes cause major economic losses worldwide. Meloidogyne incognita parasitises cotton and other crops . See NEMBASE4 for analyses of ESTs from this parasite and many other nematodes.