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BaNG Nematode and Neglected Genomics |
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| The Blaxter Lab at the Institute of Evolutionary Biology, University of Edinburgh | ||
wwwPartiGene
Building a web interface to Partigene databases
Current version 0.1 released on 11 January 2005
User guide Download Feedback Contact us WebPartiGene is a tool that generates HTML, php and CGI scripts that together form a web based interface to PartiGene relational databases. WebPartiGene allows specific clusters to be retrieved from the PartiGene database by entering either a cluster identifier or an EST idenitifier. The BLAST annotation text can also be searched and limited by BLAST score. Selected clusters are displayed in graphical format, showing the alignment of constituent sequences. The display includes links to full BLAST reports, phrap assembly quality files and public depository database files. WebPartiGene is full compatible with mulit-species PartiGene databases.
Please see the User guide for further details.
...other interesting things... Blaxter Lab Publications 2006 
Symbiosis gene in Wolbachia-nematode interaction In collaboration with Kenneth Pfarr we assisted in analysis of a gene that may be involved in the symbiosis of Wolbachia and filarial nematodes. Heider U, Blaxter M, Hoerauf A, Pfarr KM. Differential display of genes expressed in the filarial nematode Litomosoides sigmodontis reveals a putative phosphate permease up-regulated after depletion of Wolbachia endobacteria. Int J Med Microbiol. 2006 Aug;296(4-5):287-99. . |