Acrobeles complexus

nematodes.org - Bioinformatics

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh

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partigene

A tool for generating partial genomes

wwwPartiGene

Building a web interface to Partigene databases

Current version 0.1 released on 11 January 2005

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WebPartiGene is a tool that generates HTML, php and CGI scripts that together form a web based interface to PartiGene relational databases. WebPartiGene allows specific clusters to be retrieved from the PartiGene database by entering either a cluster identifier or an EST idenitifier. The BLAST annotation text can also be searched and limited by BLAST score. Selected clusters are displayed in graphical format, showing the alignment of constituent sequences. The display includes links to full BLAST reports, phrap assembly quality files and public depository database files. WebPartiGene is full compatible with mulit-species PartiGene databases.

Please see the User guide for further details.



Website Highlight


Blaxter Lab Publications 2006
ALT
Codon usage in Nematoda

Asher Cutter and James Wasmuth used the nematode EST datasets to examine the patterns of codon usage in nematodes, and the evolution of codon bias through the nematode phylogeny.

Cutter AD, Wasmuth JD, Blaxter ML. The evolution of biased codon and amino Acid usage in nematode genomes. Mol Biol Evol. 2006 Dec;23(12):2303-15. .

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