nematodes.org - downloads

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh

Database Downloads: NEMBASE4 datasets

These datasets derive from the data freeze from NEMBASE4 of 08/2008.

The following datasets are the clustered EST datasets and the associated protein predictions from NEMBASE4.

All NEMBASE4 species (one fasta file)		Nucleotide	Annotated Nucleotide	Protein
All NEMBASE4 species (tarred individual files)		Nucleotide	Annotated Nucleotide	Protein
AAC	Angiostrongylus cantonensis	Nucleotide	Annotated Nucleotide	Protein
ABC	Ancylostoma braziliense	Nucleotide	Annotated Nucleotide	Protein
ACC	Ancylostoma caninum	Nucleotide	Annotated Nucleotide	Protein
AIC	Anisakis simplex	Nucleotide	Annotated Nucleotide	Protein
ALC	Ascaris lumbricoides	Nucleotide	Annotated Nucleotide	Protein
ASC	Ascaris suum	Nucleotide	Annotated Nucleotide	Protein
AYC	Ancylostoma ceylanicum	Nucleotide	Annotated Nucleotide	Protein
BMC	Brugia malayi	Nucleotide	Annotated Nucleotide	Protein
BPC	Brugia pahangi	Nucleotide	N/A	N/A
BUC	Bursaphelenchus mucronatus	Nucleotide	Annotated Nucleotide	Protein
BXC	Bursaphelenchus xylophilus	Nucleotide	Annotated Nucleotide	Protein
CBC	Caenorhabditis brenneri	Nucleotide	Annotated Nucleotide	Protein
CEC	Caenorhabditis elegans	Nucleotide	Annotated Nucleotide	Protein
CGC	Caenorhabditis briggsae	Nucleotide	Annotated Nucleotide	Protein
CJC	Caenorhabditis japonica	Nucleotide	Annotated Nucleotide	Protein
CRC	Caenorhabditis remanei	Nucleotide	Annotated Nucleotide	Protein
CSC	Caenorhabditis sp. 5 AC-2008	Nucleotide	Annotated Nucleotide	Protein
DAC	Ditylenchus africanus	Nucleotide	Annotated Nucleotide	Protein
DIC	Dirofilaria immitis	Nucleotide	Annotated Nucleotide	Protein
DVC	Dictyocaulus viviparus	Nucleotide	Annotated Nucleotide	Protein
GMC	Globodera mexicana	Nucleotide	N/A	N/A
GPC	Globodera pallida	Nucleotide	Annotated Nucleotide	Protein
GRC	Globodera rostochiensis	Nucleotide	Annotated Nucleotide	Protein
HBC	Heterorhabditis bacteriophora	Nucleotide	Annotated Nucleotide	Protein
HCC	Haemonchus contortus	Nucleotide	Annotated Nucleotide	Protein
HGC	Heterodera glycines	Nucleotide	Annotated Nucleotide	Protein
HSC	Heterodera schachtii	Nucleotide	Annotated Nucleotide	Protein
LLC	Loa loa	Nucleotide	Annotated Nucleotide	Protein
LSC	Litomosoides sigmodontis	Nucleotide	Annotated Nucleotide	Protein
MAC	Meloidogyne arenaria	Nucleotide	Annotated Nucleotide	Protein
MCC	Meloidogyne chitwoodi	Nucleotide	Annotated Nucleotide	Protein
MHC	Meloidogyne hapla	Nucleotide	Annotated Nucleotide	Protein
MIC	Meloidogyne incognita	Nucleotide	Annotated Nucleotide	Protein
MJC	Meloidogyne javanica	Nucleotide	Annotated Nucleotide	Protein
MPC	Meloidogyne paranaensis	Nucleotide	Annotated Nucleotide	Protein
NAC	Necator americanus	Nucleotide	Annotated Nucleotide	Protein
NBC	Nippostrongylus brasiliensis	Nucleotide	Annotated Nucleotide	Protein
OCC	Onchocerca ochengi	Nucleotide	Annotated Nucleotide	Protein
ODC	Oesophagostomum dentatum	Nucleotide	Annotated Nucleotide	Protein
OFC	Onchocerca flexuosa	Nucleotide	Annotated Nucleotide	Protein
OOC	Ostertagia ostertagi	Nucleotide	Annotated Nucleotide	Protein
OVC	Onchocerca volvulus	Nucleotide	Annotated Nucleotide	Protein
PAC	Parelaphostrongylus tenuis	Nucleotide	Annotated Nucleotide	Protein
PEC	Pratylenchus penetrans	Nucleotide	Annotated Nucleotide	Protein
PPC	Pristionchus pacificus	Nucleotide	Annotated Nucleotide	Protein
PSC	Panagrolaimus superbus	Nucleotide	Annotated Nucleotide	Protein
PTC	Parastrongyloides trichosuri	Nucleotide	Annotated Nucleotide	Protein
PVC	Pratylenchus vulnus	Nucleotide	Annotated Nucleotide	Protein
RSC	Radopholus similis	Nucleotide	Annotated Nucleotide	Protein
SCC	Steinernema carpocapsae	Nucleotide	Annotated Nucleotide	Protein
SFC	Steinernema feltiae	Nucleotide	Annotated Nucleotide	Protein
SRC	Strongyloides ratti	Nucleotide	Annotated Nucleotide	Protein
SSC	Strongyloides stercoralis	Nucleotide	Annotated Nucleotide	Protein
TCC	Toxocara canis	Nucleotide	Annotated Nucleotide	Protein
TDC	Teladorsagia circumcincta	Nucleotide	Annotated Nucleotide	Protein
TIC	Trichostrongylus vitrinus	Nucleotide	Annotated Nucleotide	Protein
TLC	Toxascaris leonina	Nucleotide	Annotated Nucleotide	Protein
TMC	Trichuris muris	Nucleotide	Annotated Nucleotide	Protein
TSC	Trichinella spiralis	Nucleotide	Annotated Nucleotide	Protein
TVC	Trichuris vulpis	Nucleotide	Annotated Nucleotide	Protein
WBC	Wuchereria bancrofti	Nucleotide	Annotated Nucleotide	Protein
XIC	Xiphinema index	Nucleotide	Annotated Nucleotide	Protein
ZPC	Zeldia punctata	Nucleotide	Annotated Nucleotide	Protein

If you wish to recreate the NEMBASE4 dataset locally, the database can be rebuilt from the following postgresql database dump files.
The major one is nembase_pgsqldump.tgz (this should be used to populate a database called 'nemdb4'),
the second species.tgz (this should be used to populate a database called 'species_db4').

Website Highlight

A museum specimen of a gall wasp.
DNA barcoding may assist in the analysis of current biodiversity in relation to museum specimens and other valuable archives.

nematodes.org - downloads

Nematode & Neglected Genomics @ The Blaxter Lab, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh

Database Downloads: NEMBASE4 datasets

These datasets derive from the data freeze from NEMBASE4 of 08/2008.

Website Highlight

A museum specimen of a gall wasp. DNA barcoding may assist in the analysis of current biodiversity in relation to museum specimens and other valuable archives.

[nematodes.org v4.0] the content of these pages is copyright Mark Blaxter and colleagues. Contact the webmaster if there are problems.

Nematode & Neglected Genomics
@ The Blaxter Lab, Institute of Evolutionary Biology, School of Biological Sciences, The University of Edinburgh

A museum specimen of a gall wasp.
DNA barcoding may assist in the analysis of current biodiversity in relation to museum specimens and other valuable archives.