Database Downloads: NEMBASE2 datasets

These datasets derive from our data freeze from NemBase2 of 01/01/2006.

A text dump of the NemBase2 database is available here (121 Mb).

The following datasets are the clustered EST datasets from NemBase, the BaNG database of nematode ESTs (see www.nematodes.org for details.

ACC species name= Ancylostoma caninum (Nematoda Clade= V; NCBI TaxID= 29170)
AYC species name= Ancylostoma ceylanicum (Nematoda Clade= V; NCBI TaxID= 53326)
ALC species name= Ascaris lumbricoides (Nematoda Clade= III; NCBI TaxID= 6252)
ASC species name= Ascaris suum (Nematoda Clade= III; NCBI TaxID= 6253)
BMC species name= Brugia malayi (Nematoda Clade= III; NCBI TaxID= 6279)
DIC species name= Dirofilaria immitis (Nematoda Clade= III; NCBI TaxID= 6287)
GPC species name= Globodera pallida (Nematoda Clade= IV; NCBI TaxID= 36090)
GRC species name= Globodera rostochiensis (Nematoda Clade= IV; NCBI TaxID= 31243)
HCC species name= Haemonchus contortus (Nematoda Clade= V; NCBI TaxID= 6289)
HGC species name= Heterodera glycines (Nematoda Clade= IV; NCBI TaxID= 51029)
HSC species name= Heterodera schachtii (Nematoda Clade= IV; NCBI TaxID= 189293)
LSC species name= Litomosoides sigmodontis (Nematoda Clade= III; NCBI TaxID= 42156)
MAC species name= Meloidogyne arenaria (Nematoda Clade= IV; NCBI TaxID= 6304)
MCC species name= Meloidogyne chitwoodi (Nematoda Clade= IV; NCBI TaxID= 59747)
MHC species name= Meloidogyne hapla (Nematoda Clade= IV; NCBI TaxID= 6305)
MIC species name= Meloidogyne incognita (Nematoda Clade= IV; NCBI TaxID= 6306)
MJC species name= Meloidogyne javanica (Nematoda Clade= IV; NCBI TaxID= 6303)
MPC species name= Meloidogyne paranaensis (Nematoda Clade= IV; NCBI TaxID= 189293)
NAC species name= Necator americanus (Nematoda Clade= V; NCBI TaxID= 51031)
NBC species name= Nippostrongylus brasiliensis (Nematoda Clade= V; NCBI TaxID= 27835)
OVC species name= Onchocerca volvulus (Nematoda Clade= III; NCBI TaxID= 6282)
OOC species name= Ostertagia ostertagi (Nematoda Clade= V; NCBI TaxID= 6317)
PTC species name= Parastrongyloides trichosuri (Nematoda Clade= IV; NCBI TaxID= 131310)
PEC species name= Pratylenchus penetrans (Nematoda Clade= IV; NCBI TaxID= 45929)
PVC species name= Pratylenchus vulnus (Nematoda Clade= IV; NCBI TaxID= 45931)
PPC species name= Pristionchus pacificus (Nematoda Clade= IV; NCBI TaxID= 54126)
RSC species name= Radopholus similis (Nematoda Clade= IV; NCBI TaxID= notassigned)
SRC species name= Strongyloides ratti (Nematoda Clade= IV; NCBI TaxID= 34506)
SSC species name= Strongyloides stercoralis (Nematoda Clade= IV; NCBI TaxID= 6248)
TDC species name= Teladorsagia circumcincta (Nematoda Clade= V; NCBI TaxID= 45464)
TCC species name= Toxocara canis (Nematoda Clade= III; NCBI TaxID= 6265)
TSC species name= Trichinella spiralis (Nematoda Clade= I; NCBI TaxID= 6334)
TMC species name= Trichuris muris (Nematoda Clade= I; NCBI TaxID= 70415)
TVC species name= Trichuris vulpis (Nematoda Clade= I; NCBI TaxID= 219738)
WBC species name= Wuchereria bancrofti (Nematoda Clade= III; NCBI TaxID= 6293)
XIC species name= Xiphinema index (Nematoda Clade= II; NCBI TaxID= 46003)
ZPC species name= Zeldia punctata (Nematoda Clade= IV; NCBI TaxID= 49351)