FUNK
rpl ribosomal protein (large subunit)
The Brugia malayi ribosome
Hanan Helmy, Mark Blaxter, David Guiliano
20/4/1999
As the nomenclature of ribosomal proteins changes depending on the species, we have taken the human ribosomal protein dataset as a benchmark against which to compare the Brugia sequences. The "reference clone" is one chosen by the Blaxter lab for hybridisation studies, either as a cross-hybridisation probe for reducing the redundancy of the EST sequencing effort, or for hybridisation to BAC filters and gridded cDNA libraries. The human accession numbers against which the comparisons were made, and the name of the C. elegans homologue are also given where available.
|
rpl |
FUNK gene name |
BMC cluster number |
Blaxter lab reference clone |
human sequence accesssion number |
C.elegans cosmid with homolog |
|---|---|---|---|---|---|
|
L1 = L4 |
rpl-1 |
BMC00492 |
|
| |
|
L2 = L8 |
rpl-2 |
BMC01536 |
P25120 |
None yet | |
|
L3 |
rpl-3 |
BMC00329 |
P39023 |
F13B10.2 | |
|
L4 = L1 |
see rpl-1 |
|
|
|
|
|
L5 |
rpl-5 |
BMC01632 |
P46777 |
F54C9.5 | |
|
L6 |
rpl-6 |
BMC00250 |
Q02878 |
R151.3 | |
|
L7 |
rpl-7 |
BMC00673 |
P18124 |
F53G12.10 | |
|
L7a |
rpl-7a |
BMC00621 |
P11518 |
None yet | |
|
L8 = L2 |
see rpl-2 |
|
|
|
|
|
L9 |
rpl-9 |
BMC02343 |
P32969 |
R13A5.8 | |
|
L10 = L15 |
rpl-10 |
BMC00151 |
P39030 |
K11H12.2 | |
|
L11 |
rpl-11 |
BMC00827 |
P39026 |
F07D10.1 T22F3.4 | |
|
L12 |
rpl-12 |
BMC01716 |
P30050 |
None | |
|
L13 |
rpl-13 |
BMC00623 |
P26373 |
C32E8.2 | |
|
L14 |
rpl-14 |
BMC00082 |
D87735 |
None and No ESTs | |
|
L15 = L10 |
see rpl-10 |
|
|
|
|
|
L16 |
not yet done |
|
|
|
|
|
L17 = L23 |
rpl-17 |
BMC00460 |
P23131 |
B0336.10 | |
|
L18 |
rpl-18 |
BMC00862 |
S38352 |
None and No ESTs | |
|
L19 |
rpl-19 |
BMC02351 |
P14118 |
C09D4.5 | |
|
L20 |
not yet done |
|
|
|
|
|
L21 |
rpl-21 |
BMC01506 |
S55913 |
C14B9.7 | |
|
L22 |
rpl-22 |
BMC03219 |
P35268 |
C27A2.2 | |
|
L23 = L17 |
see rpl-17 |
|
|
|
|
|
L24 |
rpl-24 |
BMC00120 |
P38663 |
D1007.12 | |
|
L26 |
rpl-26 |
BMC00059 |
Q02877 |
F28C6.7 | |
|
L27 |
rpl-27 |
BMC03199 |
P08526 |
C53H9.1 | |
|
L27A |
rpl-27a |
BMC01540 |
U90830 |
None | |
|
L28 |
rpl-28 |
BMC01735 |
P46779 |
R11D1.8 | |
|
L29 |
rpl-29 |
BMC02039 |
P47914 |
F14E12.b | |
|
L30 |
rpl-30 |
BMC00124 |
P04645 |
None and No ESTs | |
|
L31 = L41 |
rpl-31 |
BMC01624 |
P12947 |
None and No ESTs | |
|
L32 |
rpl-32 |
BMC00221 |
P02433 |
T24B8.1 | |
|
L33 |
not yet done |
|
|
|
|
|
L34 |
rpl-34 |
BMC00738 |
P49207 |
C42C1.1 | |
|
L35 |
rpl-35 |
BMC00264 |
P42766 |
ZK652.4 | |
|
L36 |
rpl-36 |
BMC00060 |
P09896 |
F37C12.4 | |
|
L37 |
rpl-37 |
BMC00280 |
P02403 |
W01D2.d | |
|
L38 |
rpl-38 |
BMC00157 |
P23411 |
None and No ESTs | |
|
L39 |
rpl-39 |
BMC00185 |
P39025 |
C26F1.9 | |
|
L40 |
rpl-40 |
BMC00134 |
P14793 |
ZK1010.1 | |
|
L41 = L31 |
see rpl-31 |
|
|
|
|
|
L42 |
not yet done |
|
|
|
|
|
L43 |
not yet done |
|
|
|
|
|
L44 |
|
BMC01314 |
P09896 |
C09H10.2 |