FUNK

rps ribosomal protein (small subunit)

The Brugia malayi ribosome

K. Kannan, Mark Blaxter, David Guiliano

1999

As the nomenclature of ribosomal proteins changes depending on the species, we have taken the human ribosomal protein dataset as a benchmark against which to compare the Brugia sequences. The "reference clone" is one chosen by the Blaxter lab for hybridisation studies, either as a cross-hybridisation probe for reducing the redundancy of the EST sequencing effort, or for hybridisation to BAC filters. The human accession numbers against which the comparisons were made, and the name of the C. elegans homologue are also given where available.

rps	FUNK gene name	BMC cluster number	Blaxter lab reference clone	human sequence accesssion number	C.elegans cosmid with homolog
S1	rps-1			HSU27517 cds1
S2	rps-2		MBAFCZ6H10T3	P15880	B0393.1
S3	rps-3		MBL2SJ3F6T3	P23396	C23G10.3
S4	rps-4		MBAFCE8F01T3	P12750	None
S5	rps-5		MBL2SJ0A10T3	P46782	T05E11.1
S6	rps-6		MBAFCZ6F06T3	P10660	None
S7	rps-7	BMC00849	MB4SLM2A7T3	P23821	ZC434.2
S8	rps-8		MBL2SJ0H2T3	P09058	F42C5.8
S9	rps-9		MBAFCE6E07T3	P46781	F40F8.10
S10	rps-10		MB4SLY1E11T3	P46783	D1007.6
S11	rps-11		MBL2SJ9H11T3	P04643	F40F11.1
S12	rps-12	BMC00188	MB4SLY1E07T3	P25398	F54E7.2
S13	rps-13		MBL2SJ0E9T3	Q02546	C16A3.8
S14	rps-14	BMC00207	MB4SLM2A9T3	P06366	F37C12.9
S15	rps-15	BMC00151	MB4SLY1H03T3	P39027	F36A2.6
S16	rps-16		MBL2SJ9A6T3	P17008	T01C3.6
S17	rps-17		MBL2SJ8A12T3	P08708	T08B2.10
S18	rps-18		MBL2SJ8B7T3	P25232	Y57G11C.16
S19	rps-19	BMC00176	MB4SLM1C2T3	P39019	T05F1B.4
S20=S22	rps-20	BMC00239	MB4SLY1E04T3	P17075	None
S21	rps-21		MBL2SJ0H4T3	P35265	F37C12.11
S22	see rps-20
S23	rps-23	BMC00817	MB4SLM2F5T3	P39028	F28D1.7
S24	rps-24		MBL2SJ2G11T3	P16632	T26G10.3
S25	rps-25		MBAFCG3B10T3	P25111	K02B2.5
S26	rps-26		MBL2SJ9A12T3	Q06722	C03H5.f
S27	rps-27		MBL2SJ0G9T3	P42677	None
S28	rps-28		MB4SLD056T3	P25112	None
S29	rps-29		MBL2SJ4F10T3	P30054	B0412.4
S30	rps-30	BMC00146	MBL2SJ8B3T3	Q05472	C26F1.4