Brugia malayi GSS BAC End Sequences
An initial set of BAC end sequences was generated from clones identified by hybridisation ,and randomly selected clones. They are tabulated here with a listing of the hits found by BLAST search to bacterial, filarial and general databases. The linked blast* items will take you to a blast output for the relevant search. The AT content is tabulated for information: Brugia's genome is 75% AT.
David Guiliano and Mark Blaxter
|
BAC number |
Sequencing Primer |
Identification |
Hits to Bacterial |
Hits to Filarial |
blastx search |
blastn vs dbest |
blastn vs nr |
AT Content |
|---|---|---|---|---|---|---|---|---|
|
O3-2 |
T7 |
none |
none |
none |
78% | |||
|
O3-2 |
SP6 |
none |
none |
MBAFCF1A10T3 Novel |
65% | |||
|
P19-1 |
T7 |
none |
none |
none |
67% | |||
|
P19-1 |
SP6 |
none |
none |
none |
65% | |||
|
A6-8 |
T7 |
none |
none |
none |
70% | |||
|
BAC-3-1 |
T7 |
the sequence is all vector! |
vector |
none |
not counted | |||
|
BAC-3-2 |
T7 |
the sequence is all vector! |
vector |
none |
not counted | |||
|
BAC-4-2 |
T7 |
the sequence is all vector! |
vector |
none |
not counted |