National Center for Biotechnology Information (NCBI)

Welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr        Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences
          (but no EST, STS, GSS, or HTGS sequences) 
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 htgs     High Throughput Genomic Sequences 
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (148 letters)

Database:  Non-redundant GenBank+EMBL+DDBJ+PDB sequences
           330,715 sequences; 650,005,970 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|L12705|MUSEN2AB  Mouse engrailed protein (En-2) mRNA, ...   130  0.25      1
gb|U39649|CELT23F2  Caenorhabditis elegans cosmid T23F2.       129  0.29      1
emb|Z83123|CET04A11 Caenorhabditis elegans cosmid T04A11,...   127  0.39      1
emb|Z93382|CEF45G2  Caenorhabditis elegans cosmid F45G2, ...   125  0.52      1
emb|Z46792|CEC52A11 Caenorhabditis elegans cosmid C52A11,...   124  0.59      1

 

gb|L12705|MUSEN2AB Mouse engrailed protein (En-2) mRNA, complete cds.
            Length = 2753

  Minus Strand HSPs:

 Score = 130 (35.9 bits), Expect = 0.28, P = 0.25
 Identities = 52/86 (60%), Positives = 52/86 (60%), Strand = Minus / Plus

Query:    93 ATTGACTATTGTAANNTAATATTGTTGTGCAATCTAAAATGGAATGGTTCTAAAATCCAA 34
             |||  |||| ||     |||| | |      || |||  |  |   | | ||||||||||
Sbjct:  1152 ATTAGCTATGGTTCTACAATAATCTATGTACATATAATTTACAGGTGGTGTAAAATCCAA 1211

Query:    33 AAATCTAAAAATGAAAGAGTTTCAAT 8
             |||||| |  || ||| | |||  ||
Sbjct:  1212 AAATCTGACTATAAAATATTTTTGAT 1237

 

gb|U39649|CELT23F2 Caenorhabditis elegans cosmid T23F2.
            Length = 26,527

  Plus Strand HSPs:

 Score = 129 (35.6 bits), Expect = 0.34, P = 0.29
 Identities = 29/33 (87%), Positives = 29/33 (87%), Strand = Plus / Plus

Query:     18 TTTCATTTTTAGATTTTTGGATTTTAGAACCAT 50
              ||| ||||||| ||||||  |||||||||||||
Sbjct:  10980 TTTTATTTTTAAATTTTTTAATTTTAGAACCAT 11012

 

emb|Z83123|CET04A11 Caenorhabditis elegans cosmid T04A11, complete
            sequence [Caenorhabditis elegans]
            Length = 39,283

  Plus Strand HSPs:

 Score = 127 (35.1 bits), Expect = 0.50, P = 0.39
 Identities = 41/62 (66%), Positives = 41/62 (66%), Strand = Plus / Plus

Query:     25 TTTAGATTTTTGGATTTTAGAACCATTCCATTTTAGATTGCACAACAATATTANNTTACA 84
              || ||| ||||  || ||    ||||||||||| | ||  | | ||  | | |  |||||
Sbjct:  23628 TTCAGAATTTTTTATATTCATTCCATTCCATTTCATATCTCTCGACTTTTTGAAGTTACA 23687

Query:     85 AT 86
              ||
Sbjct:  23688 AT 23689

 

emb|Z93382|CEF45G2 Caenorhabditis elegans cosmid F45G2, complete
            sequence [Caenorhabditis elegans]
            Length = 36,309

  Minus Strand HSPs:

 Score = 125 (34.5 bits), Expect = 0.73, P = 0.52
 Identities = 33/43 (76%), Positives = 33/43 (76%), Strand = Minus / Plus

Query:     58 AAAATGGAATGGTTCTAAAATCCAAAAATCTAAAAATGAAAGA 16
              ||| | |||   ||  |||||| |||||||||||||| ||| |
Sbjct:  32375 AAATTCGAAATATTGGAAAATCGAAAAATCTAAAAATCAAAAA 32417

 

emb|Z46792|CEC52A11 Caenorhabditis elegans cosmid C52A11, complete
            sequence [Caenorhabditis elegans]
            Length = 42,100

  Plus Strand HSPs:

 Score = 124 (34.3 bits), Expect = 0.89, P = 0.59
 Identities = 42/65 (64%), Positives = 42/65 (64%), Strand = Plus / Plus

Query:     18 TTTCATTTTTAGATTTTTGGATTTTAGAACCATTCCATTTTAGATTGCACAACAATATTA 77
              |||  ||||| ||||||||||| ||| ||   |   |||| |||    || | || | ||
Sbjct:  22129 TTTGTTTTTTGGATTTTTGGATATTACAAATTTGAAATTTCAGAAAATACTAGAAAAATA 22188

Query:     78 NNTTA 82
                | |
Sbjct:  22189 ATTGA 22193


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     115      0      73

  Database:  Non-redundant GenBank+EMBL+DDBJ+PDB sequences
    Posted date:  Mar 12, 1998  8:57 AM
  # of letters in database:  650,005,970
  # of sequences in database:  330,715

  Number of Hits to DB: 68575
  Number of Sequences: 330715
  Number of extensions: 68575
  Number of successful extensions: 7837
  Number of sequences better than 10: 32