National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
STS's)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(298 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
330,715 sequences; 650,005,970 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
dbj|D10606|MUSTCP Mouse t-complex polypeptide 1 gene... 128 0.68 1
gb|S46763|S46763 Tcp-1=t-complex polypeptide 1 [mic... 128 0.68 1
emb|AL009010|PFSC03059 Plasmodium falciparum DNA *** SEQU... 126 0.81 1
emb|Z66515|CER53 Caenorhabditis elegans cosmid R53,... 124 0.91 1
emb|Z11115|CEZK637 Caenorhabditis elegans cosmid ZK63... 117 0.95 2
dbj|D10606|MUSTCP Mouse t-complex polypeptide 1 gene, complete cds
Length = 9261
Plus Strand HSPs:
Score = 128 (35.4 bits), Expect = 1.1, P = 0.68
Identities = 33/43 (76%), Positives = 33/43 (76%), Strand = Plus / Plus
Query: 179 CCTGNATTTATGACCAAAAAAAAAGTCAGAAGGAACTTTAATT 221
|||| ||| ||| | |||||| || ||||||||||||||
Sbjct: 9183 CCTGCCTTTGCAACCTACAAAAAAAACAAAAGGAACTTTAATT 9225
gb|S46763|S46763 Tcp-1=t-complex polypeptide 1 [mice, Genomic, 10043 nt]
Length = 10,043
Plus Strand HSPs:
Score = 128 (35.4 bits), Expect = 1.1, P = 0.68
Identities = 33/43 (76%), Positives = 33/43 (76%), Strand = Plus / Plus
Query: 179 CCTGNATTTATGACCAAAAAAAAAGTCAGAAGGAACTTTAATT 221
|||| ||| ||| | |||||| || ||||||||||||||
Sbjct: 9965 CCTGCCTTTGCAACCTACAAAAAAAACAAAAGGAACTTTAATT 10007
emb|AL009010|PFSC03059 Plasmodium falciparum DNA *** SEQUENCING IN
PROGRESS *** from contig 3-59, complete sequence [Plasmodium falciparum]
Length = 8875
Plus Strand HSPs:
Score = 126 (34.8 bits), Expect = 1.7, P = 0.81
Identities = 54/90 (60%), Positives = 54/90 (60%), Strand = Plus / Plus
Query: 79 CGAATAAATTCTGTTTAGCTTCATTTTGTGAAAATGACCACAGCTAATTCTGCTAAACTA 138
|| |||| | | || | ||| |||||||||||| | | || | || | |
Sbjct: 8170 CGGATAAGAACAATATAACGTCAGCTTGTGAAAATGAGGAAAATAAAAAGTCCTCATGTT 8229
Query: 139 AAGTCTAGAATCGATCATCGTATTTTGTAT 168
| | | ||| | ||| |||||| |||
Sbjct: 8230 TAATAAATAATAAAACATTATATTTTATAT 8259
emb|Z66515|CER53 Caenorhabditis elegans cosmid R53, complete sequence
[Caenorhabditis elegans]
Length = 35,240
Plus Strand HSPs:
Score = 124 (34.3 bits), Expect = 2.4, P = 0.91
Identities = 36/50 (72%), Positives = 36/50 (72%), Strand = Plus / Plus
Query: 53 AACATGAAAGTTTATTTCAATGAAGTCGAATAAATTCTGTTTAGCTTCAT 102
|||| || | |||||| | ||||||||||| || | |||| | | ||
Sbjct: 31501 AACAAAAAGCTATATTTCGAAAAAGTCGAATAATTTTTTTTTACCATGAT 31550
emb|Z11115|CEZK637 Caenorhabditis elegans cosmid ZK637, complete
sequence [Caenorhabditis elegans]
Length = 40,699
Minus Strand HSPs:
Score = 90 (24.9 bits), Expect = 2.9, Sum P(2) = 0.95
Identities = 27/39 (69%), Positives = 27/39 (69%), Strand = Minus / Plus
Query: 191 TCATAAATNCAGGAAATGAAGCAATACAAAATACGATGA 153
|| | | ||||||||||| | |||| || ||| ||
Sbjct: 17752 TCGAAGAATCAGGAAATGAAAAATTACATCATTCGAAGA 17790
Score = 117 (32.3 bits), Expect = 2.9, Sum P(2) = 0.95
Identities = 49/81 (60%), Positives = 49/81 (60%), Strand = Minus / Plus
Query: 131 GCAGAATTAGCTGTGGTCATTTTCACAAAATGAAGCTAAACAGAATTTATTCGACTTCAT 72
||| | |||| | | | | | | | || | | || ||| || |||||||
Sbjct: 28483 GCAAAGTTAGTTTAAATTCTACTGAAATTAAAAATTAATATAGGCATTACTCAACTTCAT 28542
Query: 71 TGAAATAAACTTTCATGTTTG 51
|| ||| |||||||||||
Sbjct: 28543 TGTAATCGTGTTTCATGTTTG 28563
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 118 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Mar 12, 1998 8:57 AM
# of letters in database: 650,005,970
# of sequences in database: 330,715
Number of Hits to DB: 142360
Number of Sequences: 330715
Number of extensions: 142360
Number of successful extensions: 7608
Number of sequences better than 10: 19