National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
STS's)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(345 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
330,715 sequences; 650,005,970 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|U86754|SPU86754 Schizosaccharomyces pombe CENP-B homo... 161 0.0025 1
emb|V00705|MISCVA Yeast mitochondrial var1 gene (allele... 143 0.0070 2
emb|Z99262|SPAC9E9 S.pombe chromosome I cosmid c9E9 161 0.0089 2
gb|L36900|YSCMTCG16 Saccharomyces cerevisiae mitochondrio... 143 0.019 2
gb|J01462|YSCMTTGSA Yeast (S.cerevisiae) mitochondrial Se... 143 0.074 1
gb|U86754|SPU86754 Schizosaccharomyces pombe CENP-B homolog (cbh) mRNA,
complete cds
Length = 2046
Plus Strand HSPs:
Score = 161 (44.5 bits), Expect = 0.0025, P = 0.0025
Identities = 61/97 (62%), Positives = 61/97 (62%), Strand = Plus / Plus
Query: 127 ACTTTTGTAAAACAGTTGTCAGTCGTTTTATATCATTGTTAATTAATATTCTTTTAATAT 186
||||||| ||| | | | | ||| | | || | ||||||||||||||| |
Sbjct: 1805 ACTTTTGGTTAACTATGGCGGGCGGCTTTGAACCCTTCTCGTTTAATATTCTTTTAAATT 1864
Query: 187 CACTTTTAAGGTATGCATTTCGATGAATGACATAACA 223
||||| || | ||| | |||| ||| ||||
Sbjct: 1865 CACTTAGTGTGTGTACATATACCTGAACAACAAAACA 1901
emb|V00705|MISCVA Yeast mitochondrial var1 gene (allele 40.0) a
ribosomal protein gb|J01525|YSCMTVAR1 Yeast (S.cerevisiae)
mitochondrial var1 gene, 40.0 allele.
Length = 1200
Minus Strand HSPs:
Score = 143 (39.5 bits), Expect = 0.0070, Sum P(2) = 0.0070
Identities = 35/43 (81%), Positives = 35/43 (81%), Strand = Minus / Plus
Query: 193 AAAAGTGATATTAAAAGAATATTAATTAACAATGATATAAAAC 151
| || | |||| ||||||||||||| ||| ||| ||||||| |
Sbjct: 157 ATAAATAATATAAAAAGAATATTAAATAATAATAATATAAACC 199
Score = 82 (22.7 bits), Expect = 0.0070, Sum P(2) = 0.0070
Identities = 34/56 (60%), Positives = 34/56 (60%), Strand = Minus / Plus
Query: 132 AAAAGTGCTAAAAATTTTCTGTGATTATATTAATGATTTGATGGATTTCACTGATA 77
||| | | || |||| ||||||||||| || | | || | | | |||
Sbjct: 756 AAATGATCATAATATTTCTATAAATTATATTAATAATATTAATAATATTAATAATA 811
emb|Z99262|SPAC9E9 S.pombe chromosome I cosmid c9E9
Length = 38,078
Minus Strand HSPs:
Score = 161 (44.5 bits), Expect = 0.0090, Sum P(2) = 0.0089
Identities = 61/97 (62%), Positives = 61/97 (62%), Strand = Minus / Plus
Query: 223 TGTTATGTCATTCATCGAAATGCATACCTTAAAAGTGATATTAAAAGAATATTAATTAAC 164
|||| ||| |||| | ||| | || |||||| ||||||||||||||| |
Sbjct: 24215 TGTTTTGTTGTTCAGGTATATGTACACACACTAAGTGAATTTAAAAGAATATTAAACGAG 24274
Query: 163 AATGATATAAAACGACTGACAACTGTTTTACAAAAGT 127
|| | | ||| | | | | ||| |||||||
Sbjct: 24275 AAGGGTTCAAAGCCGCCCGCCATAGTTAACCAAAAGT 24311
Score = 80 (22.1 bits), Expect = 0.0090, Sum P(2) = 0.0089
Identities = 20/25 (80%), Positives = 20/25 (80%), Strand = Minus / Plus
Query: 102 TAATGATTTGATGGATTTCACTGAT 78
| | || ||||||||||| |||||
Sbjct: 35382 TGAAGAATTGATGGATTTGGCTGAT 35406
gb|L36900|YSCMTCG16 Saccharomyces cerevisiae mitochondrion transfer
RNA-Ser1 (tRNA-Ser) gene and varI gene, complete cds.
Length = 3542
Minus Strand HSPs:
Score = 143 (39.5 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 35/43 (81%), Positives = 35/43 (81%), Strand = Minus / Plus
Query: 193 AAAAGTGATATTAAAAGAATATTAATTAACAATGATATAAAAC 151
| || | |||| ||||||||||||| ||| ||| ||||||| |
Sbjct: 1914 ATAAATAATATAAAAAGAATATTAAATAATAATAATATAAACC 1956
Score = 82 (22.7 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 34/56 (60%), Positives = 34/56 (60%), Strand = Minus / Plus
Query: 132 AAAAGTGCTAAAAATTTTCTGTGATTATATTAATGATTTGATGGATTTCACTGATA 77
||| | | || |||| ||||||||||| || | | || | | | |||
Sbjct: 2519 AAATGATCATAATATTTCTATAAATTATATTAATAATATTAATAATATTAATAATA 2574
gb|J01462|YSCMTTGSA Yeast (S.cerevisiae) mitochondrial Ser-tRNA and
ATPase proteolipid genes.
Length = 5371
Minus Strand HSPs:
Score = 143 (39.5 bits), Expect = 0.077, P = 0.074
Identities = 35/43 (81%), Positives = 35/43 (81%), Strand = Minus / Plus
Query: 193 AAAAGTGATATTAAAAGAATATTAATTAACAATGATATAAAAC 151
| || | |||| ||||||||||||| ||| ||| ||||||| |
Sbjct: 3744 ATAAATAATATAAAAAGAATATTAAATAATAATAATATAAACC 3786
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 119 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Mar 12, 1998 8:57 AM
# of letters in database: 650,005,970
# of sequences in database: 330,715
Number of Hits to DB: 143986
Number of Sequences: 330715
Number of extensions: 143986
Number of successful extensions: 8865
Number of sequences better than 10: 58