National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences
(but no EST, STS, GSS, or HTGS sequences)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
htgs High Throughput Genomic Sequences
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(624 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
330,715 sequences; 650,005,970 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|U41015|CELF20B6 Caenorhabditis elegans cosmid F20B6 158 0.0087 1
gb|U67514|U67514 Methanococcus jannaschii section 56 ... 154 0.019 1
gb|U80836|CELB0432 Caenorhabditis elegans cosmid B0432 150 0.039 1
emb|Z50017|KLDNAMIG1 K.lactis DNA for MIG1 gene encoding ... 147 0.069 1
emb|Z11505|CEF59B2 Caenorhabditis elegans cosmid F59B2,... 120 0.074 2
gb|U41015|CELF20B6 Caenorhabditis elegans cosmid F20B6
Length = 38,099
Plus Strand HSPs:
Score = 158 (43.7 bits), Expect = 0.0087, P = 0.0087
Identities = 74/127 (58%), Positives = 74/127 (58%), Strand = Plus / Plus
Query: 63 AAGATGAATCAAATTTTTTAGATGGCCAAAATAAAATTGCAGCAAATGCTTATTTGTCTT 122
|| | | ||| | | || || | ||||||||||| | ||| | | | ||
Sbjct: 4430 AAAAAAACTCAGAGTGATTTGAATGAGAAAATAAAATTATAAGAAAGACATGGCTTCCTA 4489
Query: 123 GTATATTTGTTTAGGTAATTTTTTAAAAAAAAAGCCTGCAAATTTTAATTTGTAAAGTTT 182
| || | |||||| | || |||| |||| |||| || ||| ||| ||
Sbjct: 4490 TATTGTTGGATTAGGTTCTGCTTAAAAATTTAAGCACGCAACAGTTTGTTTTAAAAAATT 4549
Query: 183 TAAGACA 189
||| ||
Sbjct: 4550 CAAGCCA 4556
gb|U67514|U67514 Methanococcus jannaschii section 56 of 150 of the
complete genome
Length = 10,743
Plus Strand HSPs:
Score = 154 (42.6 bits), Expect = 0.019, P = 0.019
Identities = 62/101 (61%), Positives = 62/101 (61%), Strand = Plus / Plus
Query: 146 TAAAAAAAAAGCCTGCAAATTTTAATTTGTAAAGTTTTAAGACAACTTGATTCTCGAATT 205
||||||| | | ||||||||||||| | | ||| || | | |||| | |
Sbjct: 3428 TAAAAAAGATTTATCCAAATTTTAATTTCTTGATTTTCAATTTCATTGCTCTCTCTATAT 3487
Query: 206 AACCACACATTTAATATTCTGTTTTTGTAATGATTGAAATT 246
| | ||| |||||| || | | || ||||| |||
Sbjct: 3488 ATCTCAGTTTTTTATATTCCCTTCTATTTATAATTGATATT 3528
gb|U80836|CELB0432 Caenorhabditis elegans cosmid B0432
Length = 40,921
Plus Strand HSPs:
Score = 150 (41.4 bits), Expect = 0.040, P = 0.039
Identities = 50/75 (66%), Positives = 50/75 (66%), Strand = Plus / Plus
Query: 93 ATAAAATTGCAGCAAATGCTTATTTGTCTTGTATATTTGTTTAGGTAATTTTTTAAAAAA 152
| |||||| | |||||| | ||| | || | || | | |||||||||||| |||||
Sbjct: 18896 AAAAAATTTCTGCAAATTCAAATTCATTTTTTGTAACTTTCGAGGTAATTTTTTTAAAAA 18955
Query: 153 AAAGCCTGCAAATTT 167
| || || | |
Sbjct: 18956 TACTTTTGAAATTCT 18970
emb|Z50017|KLDNAMIG1 K.lactis DNA for MIG1 gene encoding Zinc finger protein.
Length = 2417
Plus Strand HSPs:
Score = 147 (40.6 bits), Expect = 0.071, P = 0.069
Identities = 51/78 (65%), Positives = 51/78 (65%), Strand = Plus / Plus
Query: 140 ATTTTTTAAAAAAAAAGCCTGCAAATTTTAATTTGTAAAGTTTTAAGACAACTTGATTCT 199
||| | | | || || | | |||| | | ||||||||||||| ||| ||| ||| ||
Sbjct: 2091 ATTCTATTGACAATAACCATCCAAAATAGACTTTGTAAAGTTTTCAGAGAACCTGAAGCT 2150
Query: 200 CGAATTAACCACACATTT 217
| | ||| | || |
Sbjct: 2151 TGCGATCACCGAAGATAT 2168
emb|Z11505|CEF59B2 Caenorhabditis elegans cosmid F59B2, complete
sequence [Caenorhabditis elegans]
Length = 43,782
Minus Strand HSPs:
Score = 120 (33.2 bits), Expect = 0.076, Sum P(2) = 0.074
Identities = 36/51 (70%), Positives = 36/51 (70%), Strand = Minus / Plus
Query: 529 CTGCATCAGTTTAAAAATAAAACCGATTTTCGTGAAACAAATTCATTTCAA 479
|| |||||||||||||| || ||| |||||| || |||||||
Sbjct: 27995 CTTCATCAGTTTAAAAAATTTACTTATTACAAAAAAACAATTTAATTTCAA 28045
Score = 117 (32.3 bits), Expect = 0.076, Sum P(2) = 0.074
Identities = 33/45 (73%), Positives = 33/45 (73%), Strand = Minus / Plus
Query: 207 TTAATTCGAGAATCAAGTTGTCTTAAAACTTTACAAATTAAAATT 163
| ||| | ||| |||||| |||| |||| |||||||||||
Sbjct: 29413 TGAATAAAATAATTGAGTTGTTAAAAAATTTTAAAAATTAAAATT 29457
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 122 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Mar 12, 1998 8:57 AM
# of letters in database: 650,005,970
# of sequences in database: 330,715
Number of Hits to DB: 447789
Number of Sequences: 330715
Number of extensions: 447789
Number of successful extensions: 21366
Number of sequences better than 10: 147