National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences
(but no EST, STS, GSS, or HTGS sequences)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
htgs High Throughput Genomic Sequences
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(297 letters)
Database: Non-redundant Database of GenBank EST Division
1,502,158 sequences; 558,871,676 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|R47174|R47174 Y497 Rattus norvegicus cDNA clone Y4... 1010 3.6e-74 1
gb|H00069|H00069 ph5f06u_19/1TV Homo sapiens cDNA clo... 956 1.1e-69 1
gb|T24119|T24119 seq621 Homo sapiens cDNA clone b4HB3... 854 3.4e-61 1
gb|AA417501|AA417501 m2/a02 Yeast::mTn-lacZ/LEU2 library ... 854 3.4e-61 1
gb|R74678|R74678 MDB0828 Mouse brain, Stratagene Mus ... 854 3.4e-61 1
gb|R47174|R47174 Y497 Rattus norvegicus cDNA clone Y497 5' end similar
to FB21C4 homo sapiens cDNA clone FB21C4 (very high homology).
Length = 279
Plus Strand HSPs:
Score = 1010 (279.1 bits), Expect = 3.6e-74, P = 3.6e-74
Identities = 223/253 (88%), Positives = 223/253 (88%), Strand = Plus / Plus
Query: 12 GATCCTCTATAGTCTACCTGCAGGNATGCAANCTCGAGTATNCTATAGTGTCACCTAAAT 71
||||||||| |||| ||||||||| |||||| || |||||| ||||||||||||||||||
Sbjct: 1 GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAAT 60
Query: 72 ANCTTGGCGTAATCATGGTCATATCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 131
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 120
Query: 132 CCACACAACATATGAGCCGGAAGNATAAAGTGTTAAGCCCGGGGTGCCTAATGAGTGAGC 191
|||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 121 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 180
Query: 192 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAATCGGGAAACCTGTCGTGT 251
|||||||||||||||||||||||||||||||||||||| | | || || |
Sbjct: 181 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTACCAGTCGGGAAACCTGTCGTG 240
Query: 252 CAGCCTGCATTAA 264
| |||||||||
Sbjct: 241 CCAGCTGCATTAA 253
gb|H00069|H00069 ph5f06u_19/1TV Homo sapiens cDNA clone ph5f06u_19/1TV.
Length = 405
Plus Strand HSPs:
Score = 956 (264.2 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 200/214 (93%), Positives = 200/214 (93%), Strand = Plus / Plus
Query: 42 ANCTCGAGTATNCTATAGTGTCACCTAAATANCTTGGCGTAATCATGGTCATATCTGTTT 101
| || |||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 104 AGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGGGTAATCATGGTCATAGCTGTTT 163
Query: 102 CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATATGAGCCGGAAGNATAAAG 161
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 164 CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAG 223
Query: 162 TGTTAAGCCCGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTG 221
||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 224 TGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGGGTTGGGCTCACTG 283
Query: 222 CCCGCTTTCCAATCGGGAAACCTGTCGTGTCAGC 255
||||||||||| ||||||||||||||||| ||||
Sbjct: 284 CCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGC 317
gb|T24119|T24119 seq621 Homo sapiens cDNA clone b4HB3MA-Cot0.38-HAP-B-13 5'.
Length = 359
Plus Strand HSPs:
Score = 854 (236.0 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 176/184 (95%), Positives = 176/184 (95%), Strand = Plus / Plus
Query: 72 ANCTTGGCGTAATCATGGTCATATCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 131
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 61
Query: 132 CCACACAACATATGAGCCGGAAGNATAAAGTGTTAAGCCCGGGGTGCCTAATGAGTGAGC 191
|||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 62 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 121
Query: 192 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAATCGGGAAACCTGTCGTGT 251
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 122 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 181
Query: 252 CAGC 255
||||
Sbjct: 182 CAGC 185
gb|AA417501|AA417501 m2/a02 Yeast::mTn-lacZ/LEU2 library Saccharomyces
cerevisiae genomic Genomic sequences upstream of lacZ fusion
similar to MGT1
Length = 412
Plus Strand HSPs:
Score = 854 (236.0 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 176/184 (95%), Positives = 176/184 (95%), Strand = Plus / Plus
Query: 72 ANCTTGGCGTAATCATGGTCATATCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 131
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 62
Query: 132 CCACACAACATATGAGCCGGAAGNATAAAGTGTTAAGCCCGGGGTGCCTAATGAGTGAGC 191
|||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 63 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 122
Query: 192 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAATCGGGAAACCTGTCGTGT 251
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 123 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 182
Query: 252 CAGC 255
||||
Sbjct: 183 CAGC 186
gb|R74678|R74678 MDB0828 Mouse brain, Stratagene Mus musculus cDNA 3'end.
Length = 431
Plus Strand HSPs:
Score = 854 (236.0 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 176/184 (95%), Positives = 176/184 (95%), Strand = Plus / Plus
Query: 72 ANCTTGGCGTAATCATGGTCATATCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 131
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 122 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 181
Query: 132 CCACACAACATATGAGCCGGAAGNATAAAGTGTTAAGCCCGGGGTGCCTAATGAGTGAGC 191
|||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 182 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 241
Query: 192 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAATCGGGAAACCTGTCGTGT 251
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 242 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 301
Query: 252 CAGC 255
||||
Sbjct: 302 CAGC 305
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 117 0 73
Database: Non-redundant Database of GenBank EST Division
Posted date: Mar 5, 1998 10:10 AM
# of letters in database: 558,871,676
# of sequences in database: 1,502,158
Number of Hits to DB: 45060
Number of Sequences: 1502158
Number of extensions: 45060
Number of successful extensions: 1912
Number of sequences better than 10: 397