National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
STS's)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(312 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
329,766 sequences; 646,769,418 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|U51113|CVU51113 Cloning vector pBeloBAC11 1376 4.5e-106 2
emb|X53937|PSU237 Plasmid vector pSU 23 1255 1.5e-96 2
emb|X65304|CVPGEM3Z Cloning vector pGEM-3Z 1255 1.7e-96 2
emb|X65306|CVPGEM3ZP Cloning vector pGEM-3Zf(+) 1255 2.0e-96 2
emb|X65307|CVGEM3ZFM Cloning vector pGEM-3Zf(-) 1255 2.0e-96 2
gb|U51113|CVU51113 Cloning vector pBeloBAC11
Length = 7507
Plus Strand HSPs:
Score = 111 (30.7 bits), Expect = 4.5e-106, Sum P(2) = 4.5e-106
Identities = 23/24 (95%), Positives = 23/24 (95%), Strand = Plus / Plus
Query: 1 ATTCGAGCTCGGTACCCGGGGACC 24
|||||||||||||||||||||| |
Sbjct: 335 ATTCGAGCTCGGTACCCGGGGATC 358
Score = 1376 (380.2 bits), Expect = 4.5e-106, Sum P(2) = 4.5e-106
Identities = 276/277 (99%), Positives = 276/277 (99%), Strand = Plus / Plus
Query: 36 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 431
Query: 96 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 491
Query: 156 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 551
Query: 216 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 611
Query: 276 CGGCCAACGCGAACCCCTTGTGGCCGCCCGGGCCGTC 312
|||||||||||||||||||| ||||||||||||||||
Sbjct: 612 CGGCCAACGCGAACCCCTTGCGGCCGCCCGGGCCGTC 648
emb|X53937|PSU237 Plasmid vector pSU 23
Length = 2397
Minus Strand HSPs:
Score = 1255 (346.8 bits), Expect = 1.5e-96, Sum P(2) = 1.5e-96
Identities = 251/251 (100%), Positives = 251/251 (100%), Strand = Minus / Plus
Query: 286 CGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 CGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCA 1400
Query: 226 GTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACT 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 GTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACT 1460
Query: 166 TTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAA 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 TTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAA 1520
Query: 106 ACAGCTATGACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTTG 47
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 ACAGCTATGACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTTG 1580
Query: 46 CATGCCTGCAG 36
|||||||||||
Sbjct: 1581 CATGCCTGCAG 1591
Score = 111 (30.7 bits), Expect = 1.5e-96, Sum P(2) = 1.5e-96
Identities = 23/24 (95%), Positives = 23/24 (95%), Strand = Minus / Plus
Query: 24 GGTCCCCGGGTACCGAGCTCGAAT 1
| ||||||||||||||||||||||
Sbjct: 1605 GATCCCCGGGTACCGAGCTCGAAT 1628
emb|X65304|CVPGEM3Z Cloning vector pGEM-3Z
Length = 2743
Plus Strand HSPs:
Score = 111 (30.7 bits), Expect = 1.7e-96, Sum P(2) = 1.7e-96
Identities = 23/24 (95%), Positives = 23/24 (95%), Strand = Plus / Plus
Query: 1 ATTCGAGCTCGGTACCCGGGGACC 24
|||||||||||||||||||||| |
Sbjct: 7 ATTCGAGCTCGGTACCCGGGGATC 30
Score = 1255 (346.8 bits), Expect = 1.7e-96, Sum P(2) = 1.7e-96
Identities = 251/251 (100%), Positives = 251/251 (100%), Strand = Plus / Plus
Query: 36 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 103
Query: 96 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 163
Query: 156 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 223
Query: 216 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 283
Query: 276 CGGCCAACGCG 286
|||||||||||
Sbjct: 284 CGGCCAACGCG 294
emb|X65306|CVPGEM3ZP Cloning vector pGEM-3Zf(+)
Length = 3199
Plus Strand HSPs:
Score = 111 (30.7 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 23/24 (95%), Positives = 23/24 (95%), Strand = Plus / Plus
Query: 1 ATTCGAGCTCGGTACCCGGGGACC 24
|||||||||||||||||||||| |
Sbjct: 7 ATTCGAGCTCGGTACCCGGGGATC 30
Score = 1255 (346.8 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 251/251 (100%), Positives = 251/251 (100%), Strand = Plus / Plus
Query: 36 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 103
Query: 96 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 163
Query: 156 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 223
Query: 216 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 283
Query: 276 CGGCCAACGCG 286
|||||||||||
Sbjct: 284 CGGCCAACGCG 294
emb|X65307|CVGEM3ZFM Cloning vector pGEM-3Zf(-)
Length = 3199
Plus Strand HSPs:
Score = 111 (30.7 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 23/24 (95%), Positives = 23/24 (95%), Strand = Plus / Plus
Query: 1 ATTCGAGCTCGGTACCCGGGGACC 24
|||||||||||||||||||||| |
Sbjct: 7 ATTCGAGCTCGGTACCCGGGGATC 30
Score = 1255 (346.8 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 251/251 (100%), Positives = 251/251 (100%), Strand = Plus / Plus
Query: 36 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 103
Query: 96 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 163
Query: 156 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 223
Query: 216 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 GTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAT 283
Query: 276 CGGCCAACGCG 286
|||||||||||
Sbjct: 284 CGGCCAACGCG 294
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 119 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Mar 5, 1998 9:59 AM
# of letters in database: 646,769,418
# of sequences in database: 329,766
Number of Hits to DB: 69409
Number of Sequences: 329766
Number of extensions: 69409
Number of successful extensions: 5215
Number of sequences better than 10: 1244