National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences
(but no EST, STS, GSS, or HTGS sequences)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
htgs High Throughput Genomic Sequences
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(317 letters)
Database: Non-redundant Database of GenBank EST Division
1,502,158 sequences; 558,871,676 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|R47174|R47174 Y497 Rattus norvegicus cDNA clone Y4... 1006 4.4e-89 2
gb|H00069|H00069 ph5f06u_19/1TV Homo sapiens cDNA clo... 1163 7.3e-87 1
gb|R74678|R74678 MDB0828 Mouse brain, Stratagene Mus ... 1040 1.2e-76 1
gb|AA752120|AA752120 96BS0075 Rice Immature Seed Lambda Z... 1040 1.2e-76 1
gb|AA752121|AA752121 96BS0076 Rice Immature Seed Lambda Z... 1040 1.2e-76 1
gb|R47174|R47174 Y497 Rattus norvegicus cDNA clone Y497 5' end similar
to FB21C4 homo sapiens cDNA clone FB21C4 (very high homology).
Length = 279
Plus Strand HSPs:
Score = 1006 (278.0 bits), Expect = 4.4e-89, Sum P(2) = 4.4e-89
Identities = 202/203 (99%), Positives = 202/203 (99%), Strand = Plus / Plus
Query: 36 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 CTGCAGGCATGCAAGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATG 77
Query: 96 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 GTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC 137
Query: 156 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 CGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGC 197
Query: 216 GTTGCGCTCACTGCCCGCTTTCC 238
||||||||||||||||||||| |
Sbjct: 198 GTTGCGCTCACTGCCCGCTTTAC 220
Score = 256 (70.7 bits), Expect = 4.4e-89, Sum P(2) = 4.4e-89
Identities = 52/53 (98%), Positives = 52/53 (98%), Strand = Plus / Plus
Query: 234 TTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCG 286
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 TTACCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCG 269
gb|H00069|H00069 ph5f06u_19/1TV Homo sapiens cDNA clone ph5f06u_19/1TV.
Length = 405
Plus Strand HSPs:
Score = 1163 (321.4 bits), Expect = 7.3e-87, P = 7.3e-87
Identities = 235/238 (98%), Positives = 235/238 (98%), Strand = Plus / Plus
Query: 49 AGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGCGTAATCATGGTCATAGCTGTTT 108
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 104 AGCTTGAGTATTCTATAGTGTCACCTAAATAGCTTGGGGTAATCATGGTCATAGCTGTTT 163
Query: 109 CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAG 223
Query: 169 TGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTG 228
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 224 TGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGGGTTGGGCTCACTG 283
Query: 229 CCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 CCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCG 341
gb|R74678|R74678 MDB0828 Mouse brain, Stratagene Mus musculus cDNA 3'end.
Length = 431
Plus Strand HSPs:
Score = 1040 (287.4 bits), Expect = 1.2e-76, P = 1.2e-76
Identities = 208/208 (100%), Positives = 208/208 (100%), Strand = Plus / Plus
Query: 79 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 181
Query: 139 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 241
Query: 199 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 301
Query: 259 CAGCTGCATTAATGAATCGGCCAACGCG 286
||||||||||||||||||||||||||||
Sbjct: 302 CAGCTGCATTAATGAATCGGCCAACGCG 329
gb|AA752120|AA752120 96BS0075 Rice Immature Seed Lambda ZAPII cDNA
Library Oryza sativa cDNA clone 96BS0075 similar to Plasmid pBSL141
cloning vector, complete sequence
Length = 584
Plus Strand HSPs:
Score = 1040 (287.4 bits), Expect = 1.2e-76, P = 1.2e-76
Identities = 208/208 (100%), Positives = 208/208 (100%), Strand = Plus / Plus
Query: 79 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 217
Query: 139 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 277
Query: 199 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 337
Query: 259 CAGCTGCATTAATGAATCGGCCAACGCG 286
||||||||||||||||||||||||||||
Sbjct: 338 CAGCTGCATTAATGAATCGGCCAACGCG 365
gb|AA752121|AA752121 96BS0076 Rice Immature Seed Lambda ZAPII cDNA
Library Oryza sativa cDNA clone 96BS0076
Length = 585
Plus Strand HSPs:
Score = 1040 (287.4 bits), Expect = 1.2e-76, P = 1.2e-76
Identities = 208/208 (100%), Positives = 208/208 (100%), Strand = Plus / Plus
Query: 79 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 AGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT 235
Query: 139 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 CCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGC 295
Query: 199 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 TAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC 355
Query: 259 CAGCTGCATTAATGAATCGGCCAACGCG 286
||||||||||||||||||||||||||||
Sbjct: 356 CAGCTGCATTAATGAATCGGCCAACGCG 383
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 117 0 73
Database: Non-redundant Database of GenBank EST Division
Posted date: Mar 5, 1998 10:10 AM
# of letters in database: 558,871,676
# of sequences in database: 1,502,158
Number of Hits to DB: 55658
Number of Sequences: 1502158
Number of extensions: 55658
Number of successful extensions: 1997
Number of sequences better than 10: 408