National Center for Biotechnology Information (NCBI)

welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr        Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences
          (but no EST, STS, GSS, or HTGS sequences) 
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 htgs     High Throughput Genomic Sequences 
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (366 letters)

Database:  Non-redundant Database of GenBank EST Division
           1,863,775 sequences; 706,225,156 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|T23770|T23770      seq632 Homo sapiens cDNA clone HY5c...   165  0.0011    1
gb|AA078705|AA078705  7T01D08 Chromosome 7 Thymus cDNA Li...   161  0.0024    1
dbj|C93682|C93682     Dictyostelium discoideum slug cDNA,...   161  0.0024    1
dbj|AT000916|AT000916 Brassica rapa guard cell cDNA parti...   160  0.0030    1
gb|H07848|H07848      khkh055 Brassica napus cDNA 3'.          160  0.0030    1

 

gb|T23770|T23770 seq632 Homo sapiens cDNA clone HY5cDNA4-2SUB-H 5'.
            Length = 349

  Minus Strand HSPs:

 Score = 165 (45.6 bits), Expect = 0.0011, P = 0.0011
 Identities = 33/33 (100%), Positives = 33/33 (100%), Strand = Minus / Plus

Query:    33 AAAGCTTGCATGCCTGCAGGTCGACTCTAGAGG 1
             |||||||||||||||||||||||||||||||||
Sbjct:   299 AAAGCTTGCATGCCTGCAGGTCGACTCTAGAGG 331

 

gb|AA078705|AA078705 7T01D08 Chromosome 7 Thymus cDNA Library Homo
            sapiens cDNA clone 7T01D08
            Length = 248

  Plus Strand HSPs:

 Score = 161 (44.5 bits), Expect = 0.0024, P = 0.0024
 Identities = 33/34 (97%), Positives = 33/34 (97%), Strand = Plus / Plus

Query:     1 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTA 34
             |||||||||||||||||||||||||||||||| |
Sbjct:    42 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGA 75

 

dbj|C93682|C93682 Dictyostelium discoideum slug cDNA, clone SSL601
            Length = 221

  Minus Strand HSPs:

 Score = 161 (44.5 bits), Expect = 0.0024, P = 0.0024
 Identities = 33/34 (97%), Positives = 33/34 (97%), Strand = Minus / Plus

Query:    34 TAAAGCTTGCATGCCTGCAGGTCGACTCTAGAGG 1
             | ||||||||||||||||||||||||||||||||
Sbjct:   145 TCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGG 178

 

dbj|AT000916|AT000916 Brassica rapa guard cell cDNA partial sequence,
            clone DGT1260
            Length = 121

  Plus Strand HSPs:

 Score = 160 (44.2 bits), Expect = 0.0030, P = 0.0030
 Identities = 32/32 (100%), Positives = 32/32 (100%), Strand = Plus / Plus

Query:     1 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTT 32
             ||||||||||||||||||||||||||||||||
Sbjct:    73 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTT 104

 

gb|H07848|H07848 khkh055 Brassica napus cDNA 3'.
            Length = 195

  Plus Strand HSPs:

 Score = 160 (44.2 bits), Expect = 0.0030, P = 0.0030
 Identities = 32/32 (100%), Positives = 32/32 (100%), Strand = Plus / Plus

Query:     1 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTT 32
             ||||||||||||||||||||||||||||||||
Sbjct:    89 CCTCTAGAGTCGACCTGCAGGCATGCAAGCTT 120


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     119      0      73

  Database:  Non-redundant Database of GenBank EST Division
    Posted date:  Oct 14, 1998  8:41 AM
  # of letters in database:  706,225,156
  # of sequences in database:  1,863,775

  Number of Hits to DB: 175552
  Number of Sequences: 1863775
  Number of extensions: 175552
  Number of successful extensions: 8877
  Number of sequences better than 10: 59