National Center for Biotechnology Information (NCBI)

welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr        Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences
          (but no EST, STS, GSS, or HTGS sequences) 
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 htgs     High Throughput Genomic Sequences 
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (365 letters)

Database:  Non-redundant Database of GenBank EST Division
           1,863,775 sequences; 706,225,156 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|AA027161|AA027161  ze93e10.s1 Soares fetal heart NbHH1...   141  0.11      1
dbj|AT000802|AT000802 Brassica rapa guard cell cDNA parti...   134  0.35      1
dbj|AT000795|AT000795 Brassica rapa guard cell cDNA parti...   134  0.35      1
gb|AA590700|AA590700  vn59b11.r1 Barstead mouse proximal ...   129  0.67      1
gb|AA550442|AA550442  1594m3 gmbPfHB3.1, G. Roman Reddy P...   129  0.67      1

 

gb|AA027161|AA027161 ze93e10.s1 Soares fetal heart NbHH19W Homo sapiens
            cDNA clone 366570 3'
            Length = 405

  Minus Strand HSPs:

 Score = 141 (39.0 bits), Expect = 0.11, P = 0.11
 Identities = 49/75 (65%), Positives = 49/75 (65%), Strand = Minus / Plus

Query:    96 AGAAATGAAACTAGCTGAGAAAGTAAATTATCTAAATTAACATCAGTGCATTGTCACAAT 37
             | | ||  |||||  |||||||||||   | |||| | || | || | |||  | ||| |
Sbjct:   198 ACATATTCAACTATTTGAGAAAGTAATAAAGCTAATTGAATAGCATTACATAATGACATT 257

Query:    36 CAAAAATGGAACAAA 22
              ||| ||    ||||
Sbjct:   258 TAAACATTATTCAAA 272

 

dbj|AT000802|AT000802 Brassica rapa guard cell cDNA partial sequence,
            clone DGT980
            Length = 178

  Plus Strand HSPs:

 Score = 134 (37.0 bits), Expect = 0.43, P = 0.35
 Identities = 34/43 (79%), Positives = 34/43 (79%), Strand = Plus / Plus

Query:     1 TCGACCTGCAGGCATGCAAGCTTTGTTCCATTTTTGATTGTGA 43
             |||||||||||||||||||||||  | || ||  |||  || |
Sbjct:     6 TCGACCTGCAGGCATGCAAGCTTATTCCCTTTAGTGAGGGTTA 48

 

dbj|AT000795|AT000795 Brassica rapa guard cell cDNA partial sequence,
            clone DGT970
            Length = 151

  Plus Strand HSPs:

 Score = 134 (37.0 bits), Expect = 0.43, P = 0.35
 Identities = 34/43 (79%), Positives = 34/43 (79%), Strand = Plus / Plus

Query:     1 TCGACCTGCAGGCATGCAAGCTTTGTTCCATTTTTGATTGTGA 43
             |||||||||||||||||||||||  | || ||  |||  || |
Sbjct:     6 TCGACCTGCAGGCATGCAAGCTTATTCCCTTTAGTGAGGGTTA 48

 

gb|AA590700|AA590700 vn59b11.r1 Barstead mouse proximal colon MPLRB6
            Mus musculus cDNA clone 1025469 5'
            Length = 642

  Plus Strand HSPs:

 Score = 129 (35.6 bits), Expect = 1.1, P = 0.67
 Identities = 33/42 (78%), Positives = 33/42 (78%), Strand = Plus / Plus

Query:   131 AATGTAATAATGACAAGTATTAAATTTCTAAAACTTATTTAT 172
             |||| | ||||||||||| ||||  || ||||| |  |||||
Sbjct:   420 AATGCACTAATGACAAGTTTTAAGCTTATAAAAATGTTTTAT 461

 

gb|AA550442|AA550442 1594m3 gmbPfHB3.1, G. Roman Reddy Plasmodium
            falciparum genomic clone 1594m
            Length = 415

  Minus Strand HSPs:

 Score = 129 (35.6 bits), Expect = 1.1, P = 0.67
 Identities = 49/78 (62%), Positives = 49/78 (62%), Strand = Minus / Plus

Query:   100 TTTTAGAAATGAAACTAGCTGAGAAAGTAAATTATCTAAATTAACATCAGTGCATTGTCA 41
             |||| || |||||| ||  |||   || ||||||||||||| |   | |    | |    
Sbjct:    63 TTTTGGACATGAAAATATGTGAATTAGAAAATTATCTAAATAATACTAACCAAAATTCTT 122

Query:    40 CAATCAAAAATGGAACAA 23
              || | |||| | || ||
Sbjct:   123 AAAACCAAAAAGAAAAAA 140


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     119      0      73

  Database:  Non-redundant Database of GenBank EST Division
    Posted date:  Oct 14, 1998  8:41 AM
  # of letters in database:  706,225,156
  # of sequences in database:  1,863,775

  Number of Hits to DB: 139746
  Number of Sequences: 1863775
  Number of extensions: 139746
  Number of successful extensions: 7287
  Number of sequences better than 10: 18