National Center for Biotechnology Information (NCBI)

Welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr    Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
          STS's)
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (530 letters)

Database:  Non-redundant Database of GenBank EST Division
           1,784,039 sequences; 671,322,717 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|AA318542|AA318542  EST20899 Adrenal gland tumor Homo s...   143  0.11      1
gb|T23770|T23770      seq632 Homo sapiens cDNA clone HY5c...   142  0.13      1
dbj|AT000916|AT000916 Brassica rapa guard cell cDNA parti...   138  0.25      1
dbj|AT000691|AT000691 Brassica rapa guard cell cDNA parti...   137  0.30      1
dbj|AU012213|AU012213 Schizosaccharomyces pombe cDNA, clo...   137  0.30      1

 

gb|AA318542|AA318542 EST20899 Adrenal gland tumor Homo sapiens cDNA 5' end
            Length = 317

  Minus Strand HSPs:

 Score = 143 (39.5 bits), Expect = 0.11, P = 0.11
 Identities = 53/85 (62%), Positives = 53/85 (62%), Strand = Minus / Plus

Query:   364 TTTGTTTTACCAACCTTCTTCATTCAATTAATTTCTTACAAAATACTTGACGATCCACAA 305
             ||| ||||||||| ||||||||||||  ||  ||  ||  |   |    || | | | ||
Sbjct:    57 TTTNTTTTACCAAGCTTCTTCATTCACATATGTTTCTAGGATGAAGGATACTAGCAAAAA 116

Query:   304 AGACCATCTTTTTCAGCAGATTATG 280
               || || | |||   ||| | | |
Sbjct:   117 GAACAATATATTTNCTCAGTTCAGG 141

 

gb|T23770|T23770 seq632 Homo sapiens cDNA clone HY5cDNA4-2SUB-H 5'.
            Length = 349

  Minus Strand HSPs:

 Score = 142 (39.2 bits), Expect = 0.14, P = 0.13
 Identities = 30/32 (93%), Positives = 30/32 (93%), Strand = Minus / Plus

Query:    35 AAAGCTTGCAAGCCTGCAGGTCGACTCTAGGG 4
             |||||||||| ||||||||||||||||||| |
Sbjct:   299 AAAGCTTGCATGCCTGCAGGTCGACTCTAGAG 330

 

dbj|AT000916|AT000916 Brassica rapa guard cell cDNA partial sequence,
            clone DGT1260
            Length = 121

  Plus Strand HSPs:

 Score = 138 (38.1 bits), Expect = 0.29, P = 0.25
 Identities = 30/33 (90%), Positives = 30/33 (90%), Strand = Plus / Plus

Query:     4 CCCTAGAGTCGACCTGCAGGCTTGCAAGCTTTT 36
             | ||||||||||||||||||| ||||||||| |
Sbjct:    74 CTCTAGAGTCGACCTGCAGGCATGCAAGCTTAT 106

 

dbj|AT000691|AT000691 Brassica rapa guard cell cDNA partial sequence,
            clone DGT694
            Length = 218

  Plus Strand HSPs:

 Score = 137 (37.9 bits), Expect = 0.35, P = 0.30
 Identities = 29/31 (93%), Positives = 29/31 (93%), Strand = Plus / Plus

Query:     4 CCCTAGAGTCGACCTGCAGGCTTGCAAGCTT 34
             | ||||||||||||||||||| |||||||||
Sbjct:   187 CTCTAGAGTCGACCTGCAGGCATGCAAGCTT 217

 

dbj|AU012213|AU012213 Schizosaccharomyces pombe cDNA, clone spc06493
            Length = 470

  Minus Strand HSPs:

 Score = 137 (37.9 bits), Expect = 0.35, P = 0.30
 Identities = 29/31 (93%), Positives = 29/31 (93%), Strand = Minus / Plus

Query:    34 AAGCTTGCAAGCCTGCAGGTCGACTCTAGGG 4
             ||||||||| ||||||||||||||||||| |
Sbjct:     1 AAGCTTGCATGCCTGCAGGTCGACTCTAGAG 31


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     121      0      73

  Database:  Non-redundant Database of GenBank EST Division
    Posted date:  Aug 24, 1998  7:32 AM
  # of letters in database:  671,322,717
  # of sequences in database:  1,784,039

  Number of Hits to DB: 216974
  Number of Sequences: 1784039
  Number of extensions: 216974
  Number of successful extensions: 8172
  Number of sequences better than 10: 42