National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
STS's)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(519 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
360,947 sequences; 797,138,867 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
emb|X81636|HSCLCA H.sapiens clathrin light chain a gene 182 8.8e-05 1
gb|L02938|CLOCLSB Clostridium perfringens {shuttle vecto... 146 0.00017 3
gb|U90555|SVU90555 Shuttle vector pJIR1457, complete sequ... 146 0.00018 3
gb|L02937|CLOCLSA Clostridium perfringens beta-galactosi... 146 0.00020 3
gb|U90554|SVU90554 Shuttle vector pJIR1456, complete sequ... 146 0.00021 3
emb|X81636|HSCLCA H.sapiens clathrin light chain a gene
Length = 2737
Minus Strand HSPs:
Score = 182 (50.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 46/58 (79%), Positives = 46/58 (79%), Strand = Minus / Plus
Query: 76 GAGAAAAAAGAAGAAGAAATGGGATTGAAGCTTGCATGCCTGCAGGTCGACTCTAGGG 19
| || | || | || || |||| |||||||||||||||||||||||||||||| |
Sbjct: 2676 GGGAGAGGAGGAAGAGGAAGGGGAGGGAAGCTTGCATGCCTGCAGGTCGACTCTAGAG 2733
gb|L02938|CLOCLSB Clostridium perfringens {shuttle vector}
beta-galactosidase alpha-peptide (lacZ) gene, partial cds;
replication enzyme (rep) gene, 3' end cds; RNA methylase (ermBP)
gene, complete cds.
Length = 5954
Plus Strand HSPs:
Score = 146 (40.3 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 30/31 (96%), Positives = 30/31 (96%), Strand = Plus / Plus
Query: 19 CCCTAGAGTCGACCTGCAGGCATGCAAGCTT 49
| |||||||||||||||||||||||||||||
Sbjct: 27 CTCTAGAGTCGACCTGCAGGCATGCAAGCTT 57
Score = 103 (28.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 51/89 (57%), Positives = 51/89 (57%), Strand = Plus / Plus
Query: 56 CATTTCTTCTTCTTTTTTCTCGTGTACTCTTAGTTGCTCCACCTGTAACCAATTTTAATT 115
| |||| | | |||| | | | | || | |||| ||| || | |
Sbjct: 1637 CTTTTCCTTTAGCTTTTAATTGCTCTTGATAATTTTTTTTACCTCTAATATTTTCTCTTC 1696
Query: 116 GCTTAAATGTCATTTTGAAAATTATTATT 144
|||| || | |||| |||||||||||
Sbjct: 1697 TCTTATATTCCTTTTTAGAAATTATTATT 1725
Score = 85 (23.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 21/26 (80%), Positives = 21/26 (80%), Strand = Plus / Plus
Query: 330 CTCAATAATTAATTTTTTCAGATTTA 355
|| || | |||||||||||| ||||
Sbjct: 3057 CTAAAGATTTAATTTTTTCAATTTTA 3082
gb|U90555|SVU90555 Shuttle vector pJIR1457, complete sequence
Length = 6243
Plus Strand HSPs:
Score = 146 (40.3 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 30/31 (96%), Positives = 30/31 (96%), Strand = Plus / Plus
Query: 19 CCCTAGAGTCGACCTGCAGGCATGCAAGCTT 49
| |||||||||||||||||||||||||||||
Sbjct: 27 CTCTAGAGTCGACCTGCAGGCATGCAAGCTT 57
Score = 103 (28.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 51/89 (57%), Positives = 51/89 (57%), Strand = Plus / Plus
Query: 56 CATTTCTTCTTCTTTTTTCTCGTGTACTCTTAGTTGCTCCACCTGTAACCAATTTTAATT 115
| |||| | | |||| | | | | || | |||| ||| || | |
Sbjct: 1637 CTTTTCCTTTAGCTTTTAATTGCTCTTGATAATTTTTTTTACCTCTAATATTTTCTCTTC 1696
Query: 116 GCTTAAATGTCATTTTGAAAATTATTATT 144
|||| || | |||| |||||||||||
Sbjct: 1697 TCTTATATTCCTTTTTAGAAATTATTATT 1725
Score = 85 (23.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 21/26 (80%), Positives = 21/26 (80%), Strand = Plus / Plus
Query: 330 CTCAATAATTAATTTTTTCAGATTTA 355
|| || | |||||||||||| ||||
Sbjct: 3057 CTAAAGATTTAATTTTTTCAATTTTA 3082
gb|L02937|CLOCLSA Clostridium perfringens beta-galactosidase
alpha-peptide (lacZ) gene, partial cds; replication enzyme (rep)
gene, 3' end cds; chloramphenicol acetyltransferase (catP) gene,
complete cds.
Length = 6568
Plus Strand HSPs:
Score = 146 (40.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 30/31 (96%), Positives = 30/31 (96%), Strand = Plus / Plus
Query: 19 CCCTAGAGTCGACCTGCAGGCATGCAAGCTT 49
| |||||||||||||||||||||||||||||
Sbjct: 27 CTCTAGAGTCGACCTGCAGGCATGCAAGCTT 57
Score = 103 (28.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 51/89 (57%), Positives = 51/89 (57%), Strand = Plus / Plus
Query: 56 CATTTCTTCTTCTTTTTTCTCGTGTACTCTTAGTTGCTCCACCTGTAACCAATTTTAATT 115
| |||| | | |||| | | | | || | |||| ||| || | |
Sbjct: 1637 CTTTTCCTTTAGCTTTTAATTGCTCTTGATAATTTTTTTTACCTCTAATATTTTCTCTTC 1696
Query: 116 GCTTAAATGTCATTTTGAAAATTATTATT 144
|||| || | |||| |||||||||||
Sbjct: 1697 TCTTATATTCCTTTTTAGAAATTATTATT 1725
Score = 85 (23.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 21/26 (80%), Positives = 21/26 (80%), Strand = Plus / Plus
Query: 330 CTCAATAATTAATTTTTTCAGATTTA 355
|| || | |||||||||||| ||||
Sbjct: 3057 CTAAAGATTTAATTTTTTCAATTTTA 3082
gb|U90554|SVU90554 Shuttle vector pJIR1456, complete sequence
Length = 6857
Plus Strand HSPs:
Score = 146 (40.3 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 30/31 (96%), Positives = 30/31 (96%), Strand = Plus / Plus
Query: 19 CCCTAGAGTCGACCTGCAGGCATGCAAGCTT 49
| |||||||||||||||||||||||||||||
Sbjct: 27 CTCTAGAGTCGACCTGCAGGCATGCAAGCTT 57
Score = 103 (28.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 51/89 (57%), Positives = 51/89 (57%), Strand = Plus / Plus
Query: 56 CATTTCTTCTTCTTTTTTCTCGTGTACTCTTAGTTGCTCCACCTGTAACCAATTTTAATT 115
| |||| | | |||| | | | | || | |||| ||| || | |
Sbjct: 1926 CTTTTCCTTTAGCTTTTAATTGCTCTTGATAATTTTTTTTACCTCTAATATTTTCTCTTC 1985
Query: 116 GCTTAAATGTCATTTTGAAAATTATTATT 144
|||| || | |||| |||||||||||
Sbjct: 1986 TCTTATATTCCTTTTTAGAAATTATTATT 2014
Score = 85 (23.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 21/26 (80%), Positives = 21/26 (80%), Strand = Plus / Plus
Query: 330 CTCAATAATTAATTTTTTCAGATTTA 355
|| || | |||||||||||| ||||
Sbjct: 3346 CTAAAGATTTAATTTTTTCAATTTTA 3371
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 122 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Aug 24, 1998 7:08 AM
# of letters in database: 797,138,867
# of sequences in database: 360,947
Number of Hits to DB: 406945
Number of Sequences: 360947
Number of extensions: 406945
Number of successful extensions: 21731
Number of sequences better than 10: 627