National Center for Biotechnology Information (NCBI)
Welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
STS's)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(435 letters)
Database: Non-redundant Database of GenBank EST Division
1,784,039 sequences; 671,322,717 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|N98041|N98041 2103C3 czapPFDd2.1, Debopam Chakraba... 180 7.5e-05 1
gb|AA166569|AA166569 mt74b01.r1 Soares mouse lymph node N... 176 0.00016 1
gb|AA428891|AA428891 zw51b10.r1 Soares total fetus Nb2HF8... 174 0.00024 1
gb|AA549846|AA549846 0919m3 gmbPfHB3.1, G. Roman Reddy Pl... 171 0.00042 1
gb|AA891405|AA891405 EST195208 Normalized rat heart, Bent... 168 0.00074 1
gb|N98041|N98041 2103C3 czapPFDd2.1, Debopam Chakrabarti Plasmodium
falciparum cDNA clone PF2103C
Length = 388
Plus Strand HSPs:
Score = 150 (41.4 bits), Expect = 0.023, P = 0.023
Identities = 34/39 (87%), Positives = 34/39 (87%), Strand = Plus / Plus
Query: 109 TATAACAAAAAAATATATATATATATATATATATAGAAA 147
||||| ||| ||| ||||||||||||||||||||| | |
Sbjct: 97 TATAAAAAACAAACATATATATATATATATATATATATA 135
Score = 180 (49.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 48/63 (76%), Positives = 48/63 (76%), Strand = Plus / Plus
Query: 109 TATAACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTTAGACTGCTG 168
|| || | ||| ||||||||||||||||||||||| ||| || ||||| | || ||
Sbjct: 99 TAAAAAACAAACATATATATATATATATATATATATAAATTTTATTTTTTTAAAATGATG 158
Query: 169 GAA 171
| |
Sbjct: 159 GTA 161
Score = 127 (35.1 bits), Expect = 1.9, P = 0.85
Identities = 31/38 (81%), Positives = 31/38 (81%), Strand = Plus / Plus
Query: 110 ATAACAAAAAAATATATATATATATATATATATAGAAA 147
||| ||||| | | ||||||||||||||||||| | |
Sbjct: 96 ATATAAAAAACAAACATATATATATATATATATATATA 133
Minus Strand HSPs:
Score = 144 (39.8 bits), Expect = 0.074, P = 0.071
Identities = 40/54 (74%), Positives = 40/54 (74%), Strand = Minus / Plus
Query: 162 TCTAAAATCATTGCCTTTCTATATATATATATATATATATATTTTTTTGTTATA 109
| ||||| | | | |||||||||||||||||||| ||||| || || ||
Sbjct: 97 TATAAAAAACAAACATATATATATATATATATATATATAAATTTTATTTTTTTA 150
Score = 138 (38.1 bits), Expect = 0.23, P = 0.21
Identities = 34/42 (80%), Positives = 34/42 (80%), Strand = Minus / Plus
Query: 147 TTTCTATATATATATATATATATATATTTTTTTGTTATAGTG 106
| | |||||||||||||||||| || || |||| ||| | ||
Sbjct: 114 TATATATATATATATATATATAAATTTTATTTTTTTAAAATG 155
Score = 121 (33.4 bits), Expect = 6.0, P = 1.0
Identities = 33/44 (75%), Positives = 33/44 (75%), Strand = Minus / Plus
Query: 142 ATATATATATATATATATATATTTTTTTGTTATAGTGGGACAAT 99
|||||||||||||||||||||| | | |||| | | |||
Sbjct: 111 ATATATATATATATATATATATATAAATTTTATTTTTTTAAAAT 154
gb|AA166569|AA166569 mt74b01.r1 Soares mouse lymph node NbMLN Mus
musculus cDNA clone 635593 5'
Length = 309
Plus Strand HSPs:
Score = 138 (38.1 bits), Expect = 0.23, P = 0.21
Identities = 38/51 (74%), Positives = 38/51 (74%), Strand = Plus / Plus
Query: 109 TATAACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTT 159
| | | ||||||| | ||||||||||||||||||| | | | |||| |
Sbjct: 3 TTTTAAAAAAAAAAAAATATATATATATATATATATATATAAAGAGATTCT 53
Score = 176 (48.6 bits), Expect = 0.00016, P = 0.00016
Identities = 44/55 (80%), Positives = 44/55 (80%), Strand = Plus / Plus
Query: 110 ATAACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTTAGACT 164
| || ||||||||||||||||||||||||||||| |||| | | ||| | | |
Sbjct: 8 AAAAAAAAAAAATATATATATATATATATATATATAAAGAGATTCTTTTAAAATT 62
gb|AA428891|AA428891 zw51b10.r1 Soares total fetus Nb2HF8 9w Homo
sapiens cDNA clone 773563 5' similar to TR:G1224065 G1224065 MER37
TRANSPOSABLE ELEMENT, COMPLETE CONSENSUS SEQUENCE. ;
Length = 513
Minus Strand HSPs:
Score = 174 (48.1 bits), Expect = 0.00024, P = 0.00024
Identities = 38/42 (90%), Positives = 38/42 (90%), Strand = Minus / Plus
Query: 136 ATATATATATATATATTTTTTTGTTATAGTGGGACAATTTCA 95
|||||||||||||||||||||||||| | ||| ||| |||||
Sbjct: 460 ATATATATATATATATTTTTTTGTTAGAATGGAACACTTTCA 501
gb|AA549846|AA549846 0919m3 gmbPfHB3.1, G. Roman Reddy Plasmodium
falciparum genomic clone 0919m
Length = 334
Plus Strand HSPs:
Score = 136 (37.6 bits), Expect = 0.34, P = 0.29
Identities = 32/38 (84%), Positives = 32/38 (84%), Strand = Plus / Plus
Query: 106 CACTATAACAAAAAAATATATATATATATATATATATA 143
|| | || ||| | |||||||||||||||||||||||
Sbjct: 194 CATAAAAAAAAATATATATATATATATATATATATATA 231
Score = 121 (33.4 bits), Expect = 6.0, P = 1.0
Identities = 29/35 (82%), Positives = 29/35 (82%), Strand = Plus / Plus
Query: 110 ATAACAAAAAAATATATATATATATATATATATAG 144
| || | | | |||||||||||||||||||||| |
Sbjct: 200 AAAAAATATATATATATATATATATATATATATGG 234
Score = 145 (40.1 bits), Expect = 0.061, P = 0.059
Identities = 33/38 (86%), Positives = 33/38 (86%), Strand = Plus / Plus
Query: 112 AACAAAAAAATATATATATATATATATATATAGAAAGG 149
|| ||||| ||||||||||||||||||||||| | ||
Sbjct: 198 AAAAAAAATATATATATATATATATATATATATATGGG 235
Score = 139 (38.4 bits), Expect = 0.19, P = 0.17
Identities = 31/35 (88%), Positives = 31/35 (88%), Strand = Plus / Plus
Query: 113 ACAAAAAAATATATATATATATATATATATAGAAA 147
| ||||||| ||||||||||||||||||||| | |
Sbjct: 195 ATAAAAAAAAATATATATATATATATATATATATA 229
Score = 171 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 40/48 (83%), Positives = 40/48 (83%), Strand = Plus / Plus
Query: 113 ACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTTA 160
| ||||||||||||||||||||||||||||| | | | | ||||||
Sbjct: 197 AAAAAAAAATATATATATATATATATATATATATATGGGGTNATTTTA 244
Score = 125 (34.5 bits), Expect = 2.8, P = 0.94
Identities = 29/34 (85%), Positives = 29/34 (85%), Strand = Plus / Plus
Query: 114 CAAAAAAATATATATATATATATATATATAGAAA 147
|| ||||| | ||||||||||||||||||| | |
Sbjct: 194 CATAAAAAAAAATATATATATATATATATATATA 227
gb|AA891405|AA891405 EST195208 Normalized rat heart, Bento Soares
Rattus sp. cDNA clone RHEAT68 3' end
Length = 271
Plus Strand HSPs:
Score = 130 (35.9 bits), Expect = 1.1, P = 0.66
Identities = 30/35 (85%), Positives = 30/35 (85%), Strand = Plus / Plus
Query: 113 ACAAAAAAATATATATATATATATATATATAGAAA 147
||| | | ||||||||||||||||||||||| | |
Sbjct: 134 ACACACACATATATATATATATATATATATATATA 168
Score = 168 (46.4 bits), Expect = 0.00074, P = 0.00074
Identities = 48/66 (72%), Positives = 48/66 (72%), Strand = Plus / Plus
Query: 113 ACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTTAGACTGCTGGAAG 172
||| | | ||||||||||||||||||||||| | || || | || || || | |||
Sbjct: 136 ACACACATATATATATATATATATATATATATATAGACATTTATCTTTCACAGAACCAAG 195
Query: 173 AATTGA 178
|| | |
Sbjct: 196 AAATAA 201
Score = 153 (42.3 bits), Expect = 0.013, P = 0.013
Identities = 49/72 (68%), Positives = 49/72 (68%), Strand = Plus / Plus
Query: 113 ACAAAAAAATATATATATATATATATATATAGAAAGGCAATGATTTTAGACTGCTGGAAG 172
||| | | ||||||||||||||||||||||||| | | | ||| | ||
Sbjct: 140 ACATATATATATATATATATATATATATATAGACATTTATCTTTCACAGAACCAAGAAAT 199
Query: 173 AATTGAGAAATC 184
|||| || ||||
Sbjct: 200 AATTCAGCAATC 211
Minus Strand HSPs:
Score = 119 (32.9 bits), Expect = 8.8, P = 1.0
Identities = 31/40 (77%), Positives = 31/40 (77%), Strand = Minus / Plus
Query: 147 TTTCTATATATATATATATATATATATTTTTTTGTTATAG 108
| | |||||||||||||||||| | |||| | | | | ||
Sbjct: 149 TATATATATATATATATATATAGACATTTATCTTTCACAG 188
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 120 0 73
Database: Non-redundant Database of GenBank EST Division
Posted date: Aug 24, 1998 7:32 AM
# of letters in database: 671,322,717
# of sequences in database: 1,784,039
Number of Hits to DB: 337918
Number of Sequences: 1784039
Number of extensions: 337918
Number of successful extensions: 116714
Number of sequences better than 10: 2611