National Center for Biotechnology Information (NCBI)

Welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr    Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or
          STS's)
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (426 letters)

Database:  Non-redundant GenBank+EMBL+DDBJ+PDB sequences
           371,197 sequences; 843,614,952 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|M91199|STABBXM    Staphylococcus xylosus BBXM (pSBBmp1...   190  1.6e-05   1
gb|L08952|SYNPT7T319 pT7T319 cloning vector.                   184  5.0e-05   1
gb|L08948|SYNSP6T719 pSP6T719 cloning vector.                  184  5.0e-05   1
emb|X81636|HSCLCA    H.sapiens clathrin light chain a gene     182  7.4e-05   1
gb|U12812|XXU12812   Transformation vector pPRV111A, plas...   180  0.00011   1

 

gb|M91199|STABBXM Staphylococcus xylosus BBXM (pSBBmp18XM) gene, 3'end.
            Length = 7454

  Plus Strand HSPs:

 Score = 190 (52.5 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 42/47 (89%), Positives = 42/47 (89%), Strand = Plus / Plus

Query:     1 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTTCCTGCTCTA 47
             |||||||||||||||||||||||||||||||||||| ||  || | |
Sbjct:  6174 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGCTCAAGCACCA 6220

 

gb|L08952|SYNPT7T319 pT7T319 cloning vector.
            Length = 2238

  Plus Strand HSPs:

 Score = 184 (50.8 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 44/53 (83%), Positives = 44/53 (83%), Strand = Plus / Plus

Query:     1 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTTCCTGCTCTATTTATT 53
             |||||||||||||||||||||||||||||||||| | ||   || || | | |
Sbjct:    98 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGGTCTCCCTATAGTGAGT 150

 

gb|L08948|SYNSP6T719 pSP6T719 cloning vector.
            Length = 2884

  Plus Strand HSPs:

 Score = 184 (50.8 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 44/53 (83%), Positives = 44/53 (83%), Strand = Plus / Plus

Query:     1 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTTCCTGCTCTATTTATT 53
             |||||||||||||||||||||||||||||||||| | ||   || || | | |
Sbjct:   743 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGGTCTCCCTATAGTGAGT 795

 

emb|X81636|HSCLCA H.sapiens clathrin light chain a gene
            Length = 2737

  Minus Strand HSPs:

 Score = 182 (50.3 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 38/40 (95%), Positives = 38/40 (95%), Strand = Minus / Plus

Query:    40 GGAACGAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGAT 1
             |||  |||||||||||||||||||||||||||||||||||
Sbjct:  2697 GGAGGGAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGAT 2736

 

gb|U12812|XXU12812 Transformation vector pPRV111A, plastid targeting segment.
            Length = 4174

  Plus Strand HSPs:

 Score = 180 (49.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 36/36 (100%), Positives = 36/36 (100%), Strand = Plus / Plus

Query:     1 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCG 36
             ||||||||||||||||||||||||||||||||||||
Sbjct:  2965 ATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCG 3000


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     122      0      73

  Database:  Non-redundant GenBank+EMBL+DDBJ+PDB sequences
    Posted date:  Oct 14, 1998  8:12 AM
  # of letters in database:  843,614,952
  # of sequences in database:  371,197

  Number of Hits to DB: 332908
  Number of Sequences: 371197
  Number of extensions: 332908
  Number of successful extensions: 14154
  Number of sequences better than 10: 652