Brugia malayi genome project

SLATKO LAB COSMID END SEQUENCING

 The ends of a number of cosmids have been sequenced by the Slatko lab, New England BioLabs. These sequences are analysed and tabulated below. Other GSS (genome survey sequence) data  are available from the GSS page.

clone number	Primer	Bacterial	Filarial	blastx vs nr	blastn vs dbest	blastn vs nr	AT Content
BPCOSMIDA2-T3	T3		WEAK HIT TO CE  COSMID C16C2.4  HITS  RRAMCA314SK	blastx	blastn vs dbest	blastn vs nr	65%
BPCOSMIDA2	T7		Novel	blastx	blastn vs dbest	blastn vs nr	73%
BPCOSMIDD1	T7		Novel	blastx	blastn vs dbest	blastn vs nr	76%
BPCOSMIDE1-T3	T3		Novel	blastx	blastn vs dbest	blastn vs nr	70%
BPCOSMIDF1	T7		HITS C42D8.8 beta-amyloid homolog	blastx	blastn vs dbest	blastn vs nr	67%
BPCOSMIDF2	T7		Novel	blastx	blastn vs dbest	blastn vs nr	66%
BPCOSMIDG3	T7		Novel	blastx	blastn vs dbest	blastn vs nr	70%
BPCOSMIDG10	T7		Novel	blastx	blastn vs dbest	blastn vs nr	71%
BPCOSMIDH2	T7		Novel	blastx	blastn vs dbest	blastn vs nr	61%
BPCOSMIDH4	T7		Novel	blastx	blastn vs dbest	blastn vs nr	71%
BPCOSMIDH7	T7		MboI repetitive element B. malayi	blastx	blastn vs dbest	blastn vs nr	71%
BPCOSMIDH8	T7		MboI repetitive element B. malayi	blastx	blastn vs dbest	blastn vs nr	72%
BPCOSMIDH10	T7		regulatory protein nasR Klebsiella pneumoniae	blastx	blastn vs dbest	blastn vs nr	40%