National Center for Biotechnology Information (NCBI)

welcome to the blast2 network service.


PEPTIDE SEQUENCE DATABASES

 nr        Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
 month     All new or revised GenBank CDS translation+PDB+SwissProt+PIR
           sequences released in the last 30 days
 pdb       PDB protein sequences
 yeast     Yeast (Saccharomyces cerevisiae) protein sequences.
 kabat     Kabat Sequences of Proteins of Immunological Interest
 alu *     Translations of Select Alu Repeats from REPBASE
 swissprot SwissProt sequences


NUCLEOTIDE SEQUENCE DATABASES

 nr       Non-redundant GenBank+EMBL+DDBJ+PDB sequences
          (but no EST, STS, GSS, or HTGS sequences) 
 month    All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
          the last 30 days
 yeast    Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
 est +    Non-redundant Database of GenBank+EMBL+DDBJ EST Division
 sts +    Non-redundant Database of GenBank+EMBL+DDBJ STS Division
 htgs     High Throughput Genomic Sequences 
 pdb      PDB nucleotide sequences
 vector   Vector subset of GenBank
 mito *   Database of mitochondrial sequences, Rel. 1.0, July 1995
 gss      Genome Survey Sequences (includes single-pass genomic data, exon-
          trapped sequences, and Alu PCR primers.
 kabat    Kabat Sequences of Nucleic Acid of Immunological Interest
 epd      Eukaryotic Promotor Database
 alu *+   Select Alu Repeats from REPBASE

BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol. 215:403-10.

Notice:  this program and its default parameter settings are optimized
to find nearly identical sequences rapidly.  To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  tmpseq_1
        (293 letters)

Database:  Non-redundant Database of GenBank EST Division
           1,863,775 sequences; 706,225,156 total letters.
Searching..................................................done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|H04002|H04002  yj47d07.s1 Homo sapiens cDNA clone 1518...   118  0.9991    1
dbj|C16413|C16413 Human aorta cDNA 5'-end GEN-311F06           118  0.9991    1
dbj|C16549|C16549 Human aorta cDNA 5'-end GEN-349E09           118  0.9991    1
dbj|C16391|C16391 Human aorta cDNA 5'-end GEN-304C09           118  0.9991    1

 

gb|H04002|H04002 yj47d07.s1 Homo sapiens cDNA clone 151885 3'.
            Length = 351

  Minus Strand HSPs:

 Score = 118 (32.6 bits), Expect = 7.0, P = 1.0
 Identities = 44/71 (61%), Positives = 44/71 (61%), Strand = Minus / Plus

Query:   265 TCAGAAAACATTATTGGATTTTGAAAGAAGCATGGGTCTTTCAGTGAGCTAACAGTGATG 206
             |||||||||||  ||   |||| ||  ||   ||  | |||   |  ||||||| |  | 
Sbjct:   108 TCAGAAAACATACTTAAGTTTTAAAGTAATTTTGANTATTTNGATAGGCTAACAATCCTT 167

Query:   205 ACCATACATTT 195
             ||  |||  ||
Sbjct:   168 ACATTACCCTT 178

 

dbj|C16413|C16413 Human aorta cDNA 5'-end GEN-311F06
            Length = 379

  Minus Strand HSPs:

 Score = 118 (32.6 bits), Expect = 7.0, P = 1.0
 Identities = 34/47 (72%), Positives = 34/47 (72%), Strand = Minus / Plus

Query:   279 CCTCAAATTCTAGTTCAGAAAACATTATTGGATTTTGAAAGAAGCAT 233
             | ||| || ||||||||||| | |||  ||  ||  |||  ||||||
Sbjct:    97 CTTCACATGCTAGTTCAGAAGATATTGATGCCTTGAGAATAAAGCAT 143

 

dbj|C16549|C16549 Human aorta cDNA 5'-end GEN-349E09
            Length = 313

  Minus Strand HSPs:

 Score = 118 (32.6 bits), Expect = 7.0, P = 1.0
 Identities = 34/47 (72%), Positives = 34/47 (72%), Strand = Minus / Plus

Query:   279 CCTCAAATTCTAGTTCAGAAAACATTATTGGATTTTGAAAGAAGCAT 233
             | ||| || ||||||||||| | |||  ||  ||  |||  ||||||
Sbjct:    97 CTTCACATGCTAGTTCAGAAGATATTGATGCCTTGAGAATAAAGCAT 143

 

dbj|C16391|C16391 Human aorta cDNA 5'-end GEN-304C09
            Length = 446

  Minus Strand HSPs:

 Score = 118 (32.6 bits), Expect = 7.0, P = 1.0
 Identities = 34/47 (72%), Positives = 34/47 (72%), Strand = Minus / Plus

Query:   279 CCTCAAATTCTAGTTCAGAAAACATTATTGGATTTTGAAAGAAGCAT 233
             | ||| || ||||||||||| | |||  ||  ||  |||  ||||||
Sbjct:    97 CTTCACATGCTAGTTCAGAAGATATTGATGCCTTGAGAATAAAGCAT 143


Parameters:

  V=5

  Lambda     K      H
     0.192   0.173   0.357

  E     S     T     X
  10.0     118      0      73

  Database:  Non-redundant Database of GenBank EST Division
    Posted date:  Oct 14, 1998  8:41 AM
  # of letters in database:  706,225,156
  # of sequences in database:  1,863,775

  Number of Hits to DB: 117715
  Number of Sequences: 1863775
  Number of extensions: 117715
  Number of successful extensions: 4728
  Number of sequences better than 10: 6