National Center for Biotechnology Information (NCBI)
welcome to the blast2 network service.
PEPTIDE SEQUENCE DATABASES
nr Non-redundant GenBank CDS translations+PDB+SwissProt+PIR
month All new or revised GenBank CDS translation+PDB+SwissProt+PIR
sequences released in the last 30 days
pdb PDB protein sequences
yeast Yeast (Saccharomyces cerevisiae) protein sequences.
kabat Kabat Sequences of Proteins of Immunological Interest
alu * Translations of Select Alu Repeats from REPBASE
swissprot SwissProt sequences
NUCLEOTIDE SEQUENCE DATABASES
nr Non-redundant GenBank+EMBL+DDBJ+PDB sequences
(but no EST, STS, GSS, or HTGS sequences)
month All new or revised GenBank+EMBL+DDBJ+PDB sequences released in
the last 30 days
yeast Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences.
est + Non-redundant Database of GenBank+EMBL+DDBJ EST Division
sts + Non-redundant Database of GenBank+EMBL+DDBJ STS Division
htgs High Throughput Genomic Sequences
pdb PDB nucleotide sequences
vector Vector subset of GenBank
mito * Database of mitochondrial sequences, Rel. 1.0, July 1995
gss Genome Survey Sequences (includes single-pass genomic data, exon-
trapped sequences, and Alu PCR primers.
kabat Kabat Sequences of Nucleic Acid of Immunological Interest
epd Eukaryotic Promotor Database
alu *+ Select Alu Repeats from REPBASE
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(470 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
371,197 sequences; 843,614,952 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|U53152|CELK11D5 Caenorhabditis elegans cosmid K11D5. 167 0.0015 1
gb|U41109|CELF52E1 Caenorhabditis elegans cosmid F52E1 167 0.0015 1
gb|AC003045|AC003045 Human BAC clone RG205G13 from 7q31, ... 166 0.0018 1
gb|U73642|U73642 Human Chromosome 11 Cosmid cSRL30h11... 152 0.0049 2
gb|L08048|HUMHMG1C Human non-histone chromosomal protei... 157 0.0099 1
gb|U53152|CELK11D5 Caenorhabditis elegans cosmid K11D5.
Length = 18,743
Plus Strand HSPs:
Score = 167 (46.1 bits), Expect = 0.0015, P = 0.0015
Identities = 43/55 (78%), Positives = 43/55 (78%), Strand = Plus / Plus
Query: 140 AAAAAGCTACTCACGTTTATTTAAATTTTTAAATTCCAATATTTTCTTTTTTTCA 194
||||||| | | || |||||||||||||| |||| | | || ||| | ||||||
Sbjct: 1643 AAAAAGCAATTTACTTTTATTTAAATTTTCAAATACTATTAGTTTTTGATTTTCA 1697
gb|U41109|CELF52E1 Caenorhabditis elegans cosmid F52E1
Length = 56,220
Plus Strand HSPs:
Score = 167 (46.1 bits), Expect = 0.0015, P = 0.0015
Identities = 43/55 (78%), Positives = 43/55 (78%), Strand = Plus / Plus
Query: 140 AAAAAGCTACTCACGTTTATTTAAATTTTTAAATTCCAATATTTTCTTTTTTTCA 194
||||||| | | || |||||||||||||| |||| | | || ||| | ||||||
Sbjct: 45364 AAAAAGCAATTTACTTTTATTTAAATTTTCAAATACTATTAGTTTTTGATTTTCA 45418
gb|AC003045|AC003045 Human BAC clone RG205G13 from 7q31, complete
sequence [Homo sapiens]
Length = 25,094
Plus Strand HSPs:
Score = 166 (45.9 bits), Expect = 0.0018, P = 0.0018
Identities = 90/161 (55%), Positives = 90/161 (55%), Strand = Plus / Plus
Query: 109 TTATTGAAGAGAAATATTTCGTTGTGGAAAAAAAAAGCTACTCACGTTTATTTAAATTTT 168
| ||| | | || ||||| ||| |||| || | | |||| || |||
Sbjct: 4122 TGATTCATGTCAAGTATTTTTCTGTTGAAATTAATCTATTATTGTGTTTCTTATAATAAA 4181
Query: 169 TAAATTCCAATATTTTCTTTTTTTCAAGTTTAAAATTGAAATATGAGGCTAGGGCATATT 228
| | || | ||| | ||||| | ||| ||| | | | | | |||
Sbjct: 4182 ATTAATTCATTTTTTATTGTTTTTTCATATTATAATAGGCAACATTGATTTTTTAAAATT 4241
Query: 229 TGTTTTTGTCAACATTTGGTTCTGTAAAGTATTTACATTTA 269
|||||||| | ||| || | | | |||||| |||||
Sbjct: 4242 TGTTTTTGCTATACTTTATTTTTCTTGAATATTTATATTTA 4282
gb|U73642|U73642 Human Chromosome 11 Cosmid cSRL30h11, complete
sequence [Homo sapiens]
Length = 41,032
Minus Strand HSPs:
Score = 152 (42.0 bits), Expect = 0.0049, Sum P(2) = 0.0049
Identities = 48/70 (68%), Positives = 48/70 (68%), Strand = Minus / Plus
Query: 382 CCTAAAACTTACTCTAAAAGATTTAAGAAAACAATTTGATAAAAAAAGGAAGCCAGTAAT 323
|||||||||||| || || | | | |||| || | ||||||| | || ||| ||
Sbjct: 528 CCTAAAACTTACAGTATAATAATAATAAAAATAAATAAATAAAAATAAAAAACCAATACC 587
Query: 322 AAGAGAAAAT 313
|| | ||||
Sbjct: 588 AAAACCAAAT 597
Score = 98 (27.1 bits), Expect = 0.0049, Sum P(2) = 0.0049
Identities = 30/43 (69%), Positives = 30/43 (69%), Strand = Minus / Plus
Query: 251 AGAACCAAATGTTGACAAAAACAAATATGCCCTAGCCTCATAT 209
||| ||| | | ||||||||||||| || | |||| ||
Sbjct: 4718 AGAGTAAAACATAGTGAAAAACAAATATGTTCTGGGCTCACAT 4760
gb|L08048|HUMHMG1C Human non-histone chromosomal protein (HMG-1)
retropseudogene.
Length = 1814
Plus Strand HSPs:
Score = 157 (43.4 bits), Expect = 0.0099, P = 0.0099
Identities = 45/62 (72%), Positives = 45/62 (72%), Strand = Plus / Plus
Query: 174 TCCAATATTTTCTTTTTTTCAAGTTTAAAATTGAAATATGAGGCTAGGGCATATTTGTTT 233
| || ||| || ||||| ||| ||||||||||| | ||||| | | ||||||||
Sbjct: 1361 TACACAATTCACTCTTTTTAAAGAAAAAAATTGAAATGTAAGGCTGTGTAAGATTTGTTT 1420
Query: 234 TT 235
||
Sbjct: 1421 TT 1422
Parameters:
V=5
Lambda K H
0.192 0.173 0.357
E S T X
10.0 122 0 73
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
Posted date: Oct 14, 1998 8:12 AM
# of letters in database: 843,614,952
# of sequences in database: 371,197
Number of Hits to DB: 554983
Number of Sequences: 371197
Number of extensions: 554983
Number of successful extensions: 37079
Number of sequences better than 10: 373