David Guiliano's Large Ribosomal Subunit Operons
This table describes a number of C. elegans operons for which we have Brugia malayi EST homologues. David Guiliano is actively searching for these conserved operons in Brugia.
|
protein |
cosmid |
Coordinates |
operonic+/- |
gene 1 |
gene 2 |
gene 3 |
gene 4 |
|
other comments |
|
Large Subunit |
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L1=L4 |
B0041 |
1[-19.00,17.50] |
- |
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L2 |
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L3 |
F13B10 |
2[-25.10,7.00] |
- |
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L5 |
F54C9 |
2[-18.32,24.00] |
+ |
F54C9.5 L5 |
F54C9.6 ATP binding protein SWMFCA1563SK |
F54C9.7 NH |
F54C9.8 YST supressor protein |
F54C9.9 ADP ribosylation factor SW3ICA962SK |
SWMFCA911SK matches F54C9.1 close to L26 operon |
|
L6 |
R151 |
3[-25.10,7.00] |
+ |
R151.3 L6 |
R151.4 metallo protease |
|
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SW3ICA1585SK matches R151.8 |
|
L7 |
F53G12 |
1[-20.50,-19.50] |
+ |
F53G12.10 L7 |
F53G12.9 NH |
F53G12.8 N |
|
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None |
|
L7a |
- |
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L9 |
- |
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L10=L15 |
K11H12 |
4[-30.00,17.84] |
- |
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None |
|
L11 |
F07D10 T22F3 |
X[-20.00,24.50] 5[-23.00,18.09] |
- - |
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None |
|
L12 |
- |
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L13 |
C32E8 |
1[-19.00,17.50] |
+ |
C32E8.3 NH |
C32E8.2 L13 |
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Intergenic region ~500bp SWMFCA858SK matches C32E8.10 |
|
L14 |
- |
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L17 |
B0336 |
3[-25.10,7.00] |
+ |
B0336.10 L17 |
B0336.9 D.m. supressor protien |
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L18 |
- |
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L19 |
C09D4 |
1[-19.00,17.50] |
+ |
C09D4.5 L17 |
C09D4.4 |
T05E8.3 helicase |
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|
T05E8.3 may be a bit far |
|
L21 |
C14B9 |
3[-25.10,7.00] |
- |
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AS4SLC535T3 matches C14B9.1 alpha-B-crystallin possable operons C14B9.5 and C14B9.6 C14B9.4 and K06H7.1(two protein kinases) |
|
L22 |
C27A2 |
2[-18.32,24.00] |
- |
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L24 |
D1007 |
1[-19.00,17.50] |
+ |
D1007.12 L24 |
D1007.11 NH |
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L26 |
F28C6 |
2[-18.32,24.00] |
+ |
F28C6.7 |
F28C6.6 77kDa polya factor AS4SLC587T3 |
F28C6.8 MAP kinase phosphatase |
F28C6.10 NH |
|
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|
L27 |
C53H9 |
1[-19.00,17.50] |
+ |
C53H9.2 GTP binding protein |
C53H9.1 L27 |
|
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|
L27A |
- |
- |
+ |
P1 MB4SLM1G3T3 |
L27A MBAFCX2D06T3 |
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L28 |
R11D1 |
5[-23.00,18.09] |
- |
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R11D1.6 ,.5,.4,.3 in operon (2 7TM rec) R11D1.1 and K10C8.3 possable operon |
|
L29 |
F14E12 |
4[-30.00,17.89] |
+ |
F14E12.b L29 |
F14E12.c |
F14E12.d |
F14E12.e tHOCORFs |
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L30 |
- |
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L31 |
- |
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L32 |
T24B8 |
2[18.32,24.00] |
- |
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other possable operon T24B8.7,.4,.3 |
|
L34 |
C42C1 |
1[-19.00,17.50] |
- |
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huge operon near it C42C1.b,.c,.d,.e,.f |
|
L35 |
ZK652 |
3[-25.10, 7.00] |
- |
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ZK652.9 is t next to ZK652.3 (L35) on opposite strand ZK652.2,.3 are in a possable operon AS4SLC662M13R matches ZK652.1 AS3ISB022SL matches ZK652.2 MBAFCZ1A7T3 matches ZK652.9 |
|
L36 |
F37C12 |
3[-25.10,7.00] |
+ |
F37C12.4 L36 |
F37C12.3 Acyl Carrier Protein |
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F37C12.13 Auto antigen and R151.9 NH possable operon |
|
L38 |
- |
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L39 |
C26F1 |
5[23.00,18.09] |
- |
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C26F1.2,.1 in an operon C26F1.4,.3 n operon |
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L40 |
- |
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L44 |
C09H10 |
2[-18.32,24.00] |
- |
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C09H10.3,.4 SWMFCA704SK matches C09H10.3 C09H10.9,.6,.7 Could be in operons |
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