David Guiliano's Small Ribosomal Subunit Operons

This table describes a number of C. elegans operons for which we have Brugia malayi EST homologues. David Guiliano is actively searching for these conserved operons in Brugia.

protein

cosmid

Coordinates

operonic+/-

gene 1

gene 2

gene 3

gene 4

other comments

Small

Subunit

S1

-

S2

B0393

3[25.10,7.00]

-

S3

C23G10

3[25.10,7.00]

+

C23G10.3

S3

C23G10.2

hypothYST

C23G10.1Ser/Thr phosphatase

S4

-

S5

T05E11

4[30.00,17.89]

+

T05E11.1

S5

T05E11.6

hemoglobinase

MBAFCZ3H10T3 matches T05E11.3

endoplasmin

S6

-

S7

ZC434

1[-19.00,17.50]

-

ZC434.5,.6,.7 look they are in an operon

MBAFCF1C02T3 matches ZC434.8

S8

F42C5

4[-30.00,17.89]

-

S9

F40F8

2[-18.32,24.00]

-

MBL2SJ9G8T3 matches F40F8.9 which is next to S9 on the opposite strand

S10

D10076

1[-19.00,17.50]

+

D10076.6 S10

D10076.5

NH

D10076.4

NH

v close to L24 operon

S11

F40F11

4[-30.00,17.89]

-

S12

F54E7

3[25.10,7.00]

+

F54E7.2 S12

F54E7.1

NH

F54E7.7,.6,.5,.4,.3,.3,.2,.1

is another huge operon

S13

C16A3

3[25.10,7.00]

-

S14

F37C12

3[25.10,7.00]

-

S15

F36A2

1[-19.00,17.50]

-

S16

T01C3

5[-23.00,18.09]

+

T01C3.7 fibrillarin

T01C3.6

S16

S17

T08B2

1[-19.00,17.50]

+

T08B2.11

hits other Ce cosmids

T08B2.10

S17

T08B2.10.9,.8,.7 probabl in an operon

S18

-

S19

-

S20

-

S21

F37C12

3[25.10,7.00]

-

S23

F28D1

4[-30.00,17.89]

-

SW3ICA468SK matches

F28D1.9 fatty acid transport protein

S24

T26G10

3[25.10,7.00]

-

S25

K02B2

4[-30.00,17.89]

+

K02B2.5 S25

K02B2.4 other Ce cosmid hits

S26

C03H5

2[-18.32,24.00]

-

C03H5.d,.e are in an operon

S27

-

S28

-

S29

B0412

3[25.10,7.00]

+

B0412.4

S29

B0412.5

NH

next to daf-7

S30

C26F1

5[-23.00,18.09

+

C26F1.4

S30

C26F1.5

NH

same cosmid as L39

Other

P0

F25H2

1[-19.00,17.50]

+

F25H2.10

P0

F25H2.11

TCTP

F25H2.12

NH

F25H2.13

DNA repair helicase

F25H2.5 NDK

F25H2.9 proteosome zeta chain MBAFCZ4E08T3

F25H2.6 NH MBAFCE2G10T3

P1

-

+

P1

MB4SLM1G3T3

L27A

MBAFX2D06T3

As reported in Blumenthal 1997

P2

C37A2

1[-19.00,17.50]

+

C37A2.7

P2

C37A2.6

possable methytansferase

protein	cosmid	Coordinates	operonic+/-	gene 1	gene 2	gene 3	gene 4	other comments
Small Subunit
S1	-
S2	B0393	3[25.10,7.00]	-
S3	C23G10	3[25.10,7.00]	+	C23G10.3 S3	C23G10.2 hypothYST	C23G10.1Ser/Thr phosphatase
S4	-
S5	T05E11	4[30.00,17.89]	+	T05E11.1 S5	T05E11.6 hemoglobinase			MBAFCZ3H10T3 matches T05E11.3 endoplasmin
S6	-
S7	ZC434	1[-19.00,17.50]	-					ZC434.5,.6,.7 look they are in an operon MBAFCF1C02T3 matches ZC434.8
S8	F42C5	4[-30.00,17.89]	-
S9	F40F8	2[-18.32,24.00]	-					MBL2SJ9G8T3 matches F40F8.9 which is next to S9 on the opposite strand
S10	D10076	1[-19.00,17.50]	+	D10076.6 S10	D10076.5 NH	D10076.4 NH		v close to L24 operon
S11	F40F11	4[-30.00,17.89]	-
S12	F54E7	3[25.10,7.00]	+	F54E7.2 S12	F54E7.1 NH			F54E7.7,.6,.5,.4,.3,.3,.2,.1 is another huge operon
S13	C16A3	3[25.10,7.00]	-
S14	F37C12	3[25.10,7.00]	-
S15	F36A2	1[-19.00,17.50]	-
S16	T01C3	5[-23.00,18.09]	+	T01C3.7 fibrillarin	T01C3.6 S16
S17	T08B2	1[-19.00,17.50]	+	T08B2.11 hits other Ce cosmids	T08B2.10 S17			T08B2.10.9,.8,.7 probabl in an operon
S18	-
S19	-
S20	-
S21	F37C12	3[25.10,7.00]	-
S23	F28D1	4[-30.00,17.89]	-					SW3ICA468SK matches F28D1.9 fatty acid transport protein
S24	T26G10	3[25.10,7.00]	-
S25	K02B2	4[-30.00,17.89]	+	K02B2.5 S25	K02B2.4 other Ce cosmid hits
S26	C03H5	2[-18.32,24.00]	-					C03H5.d,.e are in an operon
S27	-
S28	-
S29	B0412	3[25.10,7.00]	+	B0412.4 S29	B0412.5 NH			next to daf-7
S30	C26F1	5[-23.00,18.09	+	C26F1.4 S30	C26F1.5 NH			same cosmid as L39

Other
P0	F25H2	1[-19.00,17.50]	+	F25H2.10 P0	F25H2.11 TCTP	F25H2.12 NH	F25H2.13 DNA repair helicase	F25H2.5 NDK F25H2.9 proteosome zeta chain MBAFCZ4E08T3 F25H2.6 NH MBAFCE2G10T3
P1	-		+	P1 MB4SLM1G3T3	L27A MBAFX2D06T3			As reported in Blumenthal 1997
P2	C37A2	1[-19.00,17.50]	+	C37A2.7 P2	C37A2.6 possable methytansferase