Species: Meloidogyne hapla

Parent taxon: Meloidogyne

NCBI Taxonomy Page: NCBI txid:6305

Description: tylenchine plant parasite; root knot nematode

BClade: Bclade IV

Interested people:

Genome size: 54 Mb

Genome size source: genome sequence

Genome AT%: 73 %

Genome AT% source: genome sequence

Genome Publications: PMID:18809916 PMID:19400640

Transcriptome Publications: PMID:15876542

Strain Sequencing Status

This section has sequencing information about strains of this species.

To add information about sequencing strains of the species Meloidogyne hapla, use the following form with the full strain name, e.g., Meloidogyne hapla Strain not specified:

To update information about the sequencing status of the strains, click on the strain pages below, and edit those pages:

Strain Genome Sequencing:

Strain	Status	Contact	Funder	Institution	Sequencing Centre	Plan/Status	URL	Reference Strain
Meloidogyne hapla VW9	published	David Bird		Center for the Biology of Nematode Parasitism	Genomic Sciences Laboratory NCSU DOE Joint Genome Institute	Multiple-sized insert libraries were constructed from DNA from the inbred line VW9, and whole-genome shotgun sequencing reactions were analyzed by 1.04 million reads yielding 587 million base pairs of sequence. By using Arachne, these were assembled into 1,523 scaffolds, resulting in 10.4x coverage of the ~54-Mb genome and spanning 99% of the VW9 genome	http://www.hapla.org/ http://www.wormbase.org/db/gb2/gbrowse/m_hapla/ ftp://ftp.wormbase.org/pub/wormbase/species/m_hapla/	1X

Strain Transcriptome Sequencing:

Strain	Status	Contact	Funder	Institution	Sequencing Centre	Plan/Status	URL	Reference Strain
Meloidogyne hapla VW9	complete	David Bird				NEMBASE4: clusterid MHC, updated 08/2008, 6 libraries, 7,021 clusters, 23,992 ESTs	http://www.nematodes.org/nembase4 http://www.nematode.net	1X

Phylogenetic context