Strains with Data

From NematodeGenomes

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Genome data available
Transcriptome data available

Strain	Species	Strain genome status	Strain genome contact	Strain genome seqcentre	Strain genome url
Ascaris suum Davis	Ascaris suum	ongoing	Richard Davis	The Genome Institute at Washington University	http://www.ncbi.nlm.nih.gov/nuccore/320321071
Ascaris suum Victoria/Ghent	Ascaris suum	published	Robin Gasser Aaron Jex		ftp://ftp.wormbase.org/pub/wormbase/species/a_suum/
Ascaris suum WTSI	Ascaris suum	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/resources/downloads/helminths/ascaris-suum.html
Brugia malayi TRS	Brugia malayi	published	Elodie Ghedin	J Craig Venter Institute	http://www.wormbase.org/db/gb2/gbrowse/b_malayi ftp://ftp.wormbase.org/pub/wormbase/species/b_malayi/
Bursaphelenchus xylophilus Ka4C1	Bursaphelenchus xylophilus	published	Taisei Kikuchi Matt Berriman	Wellcome Trust Sanger Institute	http://www.genedb.org/Homepage/Bxylophilus
Caenorhabditis angaria PS1010	Caenorhabditis angaria	published	Erich Schwarz Ali Mortazavi Paul Sternberg		http://www.wormbase.org/db/gb2/gbrowse/c_angaria/ ftp://ftp.wormbase.org/pub/wormbase/species/c_angaria/
Caenorhabditis brenneri PB2801	Caenorhabditis brenneri	complete	Makedonka Mitreva Erich Schwarz	The Genome Institute at Washington University	http://www.wormbase.org/db/gb2/gbrowse/c_brenneri/ ftp://ftp.wormbase.org/pub/wormbase/species/c_brenneri/
Caenorhabditis briggsae AF16	Caenorhabditis briggsae	published		The Genome Institute at Washington University	http://www.wormbase.org/db/gb2/gbrowse/c_briggsae/ ftp://ftp.wormbase.org/pub/wormbase/species/c_briggsae/
Caenorhabditis elegans N2	Caenorhabditis elegans	published		Wellcome Trust Sanger Institute The Genome Institute at Washington University	http://www.wormbase.org/db/gb2/gbrowse/c_elegans/ ftp://ftp.wormbase.org/pub/wormbase/species/c_elegans/
Caenorhabditis japonica DF5081	Caenorhabditis japonica	complete	Makedonka Mitreva Erich Schwarz	The Genome Institute at Washington University	http://www.wormbase.org/db/gb2/gbrowse/c_japonica/ ftp://ftp.wormbase.org/pub/wormbase/species/c_japonica/
Caenorhabditis remanei PB4641	Caenorhabditis remanei	complete	Makedonka Mitreva Erich Schwarz	The Genome Institute at Washington University	http://www.wormbase.org/db/gb2/gbrowse/c_remanei/ ftp://ftp.wormbase.org/pub/wormbase/species/c_remanei/
Caenorhabditis sp. 11 JU1373	Caenorhabditis sp. 11	ongoing	Makedonka Mitreva	The Genome Institute at Washington University	http://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_sp11_JU1373/
Caenorhabditis sp. 5 DRD-2008 JU800	Caenorhabditis sp. 5 DRD-2008	ongoing	Mark Blaxter	The GenePool	http://nematodes.org/downloads/959nematodegenomes/blast
Caenorhabditis sp. 7 JU1286	Caenorhabditis sp. 7	ongoing	Makedonka Mitreva	The Genome Institute at Washington University	ftp://ftp.wormbase.org/pub/wormbase/species/c_sp7/
Caenorhabditis sp. 9 AC-2009 JU1422	Caenorhabditis sp. 9 AC-2009	in annotation	Makedonka Mitreva	The Genome Institute at Washington University	ftp://ftp.wormbase.org/pub/wormbase/species/c_sp9/
Dictyocaulus viviparus Not specified	Dictyocaulus viviparus	ongoing	Makedonka Mitreva	The Genome Institute at Washington University	http://www.nematode.net/
Dirofilaria immitis Edinburgh/TRS/Basel	Dirofilaria immitis	in annotation	Mark Blaxter	The GenePool Fasteris	http://nematodes.org/downloads/959nematodegenomes/blast
Globodera pallida Not specified	Globodera pallida	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/sequencing/Globodera/pallida/
Haemonchus contortus Moredun	Haemonchus contortus	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/Projects/H_contortus/ ftp://ftp.wormbase.org/pub/wormbase/species/h_contortus/ http://www.wormbase.org
Heterorhabditis bacteriophora M31e	Heterorhabditis bacteriophora	in annotation	Paul Sternberg	The Genome Institute at Washington University	http://genome.wustl.edu/genome.cgi?GENOME=Heterorhabditis%20%20bacteriophora
Howardula aoronymphium Jaenike	Howardula aoronymphium	ongoing	Mark Blaxter	The GenePool	http://nematodes.org/downloads/959nematodegenomes/blast
Litomosoides sigmodontis lab strain established from Cameroon by Odile Bain	Litomosoides sigmodontis	ongoing	Mark Blaxter	The GenePool	http://nematodes.org/downloads/959nematodegenomes/blast
Loa loa Nutman/Broad	Loa loa	in annotation	Thomas Nutman	The Broad Institute of MIT and Harvard	http://www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html
Meloidogyne hapla VW9	Meloidogyne hapla	published	David Bird	Genomic Sciences Laboratory NCSU DOE Joint Genome Institute	http://www.hapla.org/ http://www.wormbase.org/db/gb2/gbrowse/m_hapla/ ftp://ftp.wormbase.org/pub/wormbase/species/m_hapla/
Meloidogyne incognita Morelos	Meloidogyne incognita	published	Pierre Abad Etienne G.J. Danchin	Genoscope	http://www.inra.fr/meloidogyne_incognita http://www.wormbase.org/db/gb2/gbrowse/m_incognita/ ftp://ftp.wormbase.org/pub/wormbase/species/m_incognita/
Nippostrongylus brasiliensis lab strain	Nippostrongylus brasiliensis	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/sequencing/Nippostrongylus/brasiliensis/
Onchocerca ochengi Cameroon/wild	Onchocerca ochengi	in annotation	Mark Blaxter	The GenePool Wellcome Trust Sanger Institute	http://nematodes.org/downloads/959nematodegenomes/blast
Onchocerca volvulus Nutman/Broad	Onchocerca volvulus	ongoing	Thomas Nutman	The Broad Institute of MIT and Harvard	http://www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html
Onchocerca volvulus WTSI/wild Liberia	Onchocerca volvulus	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/resources/downloads/helminths/onchocerca-volvulus.html
Oscheius tipulae CEW1	Oscheius tipulae	ongoing	Mark Blaxter	The GenePool	http://nematodes.org/downloads/959nematodegenomes/blast
Pristionchus pacificus California	Pristionchus pacificus	published		The Genome Institute at Washington University	http://www.pristionchus.org/ http://www.wormbase.org/db/gb2/gbrowse/p_pacificus/ ftp://ftp.wormbase.org/pub/wormbase/species/p_pacificus/
Strongyloides ratti ED321	Strongyloides ratti	in annotation	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/resources/downloads/helminths/strongyloides-ratti.html
Teladorsagia circumcincta Not specified	Teladorsagia circumcincta	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/resources/downloads/helminths/teladorsagia-circumcincta.html
Trichinella spiralis Not specified	Trichinella spiralis	published	Makedonka Mitreva	The Genome Institute at Washington University	http://www.nematode.net/ http://www.wormbase.org/db/gb2/gbrowse/t_spiralis/ ftp://ftp.wormbase.org/pub/wormbase/species/t_spiralis/
Trichuris muris E isolate	Trichuris muris	ongoing	Matt Berriman Nancy Holroyd	Wellcome Trust Sanger Institute	http://www.sanger.ac.uk/Projects/T_muris/
Wuchereria bancrofti Nutman/Broad	Wuchereria bancrofti	in annotation	Thomas Nutman	The Broad Institute of MIT and Harvard	http://www.broadinstitute.org/annotation/genome/filarial_worms/MultiHome.html