Search NEMBASE3 for sequences with specified annotations

Use the form below to set key words and parameters for searching the available sequence annotations in NEMBASE3.
First select the annotation type; then enter the parameters in the pop-in fields; then (optionally) select a subset of species to search; then select an output option. Finally click "Search" (at the bottom of the page). To perform another search, please reaload this page from the menu to the left, to clear any fields you may have entered previously.

Annotation Type Detailed parameters for search (pop-in) BLAST hit description BLASTX (protein hits)    BLASTN (nt hits)    search text Minimum score GOtcha description Description [e.g. "actin binding"] GO id [e.g. GO:0019207] search text Minimum confidence (1-100; note that 50 is a good score!) KEGG Description [e.g. "Apoptosis"] pathway number [e.g. "04210"] KEGG orthology number [e.g. "K04739"] search text Enzyme Commission description [e.g. "cGMP-dependentproteinkinase"] number [e.g. "2.7.11.12"] search text Domain Interpro description [e.g. "actin-binding"] Domain ID [e.g. "IPR000595" or "PF00027"] search text Tip if you want actin but not interacting use spaces in the Text field Species to search All | CladeI | Rhabditina | CladeIII | CladeIV | CladeV | Trichinellida | Ascarididomorpha | Spiruromorpha | Strongyloidoidea | Tylenchomorpha | Strongylomorpha | Meloidogyne Xiphinema index Trichuris muris Trichinella spiralis Trichuris vulpis Ascaris lumbricoides Ascaris suum Toxocara canis Brugia malayi Dirofilaria immitis Litomosoides sigmodontis Onchocerca volvulus Wuchereria bancrofti Heterodera schachtii Parastrongyloides trichosuri Strongyloides ratti Strongyloides stercoralis Globodera pallida Globodera rostochiensis Heterodera glycines Pratylenchus penetrans Pratylenchus vulnus Radopholus similis Zeldia punctata Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pristionchus pacificus Ancylostoma caninum Ancylostoma ceylanicum Haemonchus contortus Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Teladorsagia circumcincta Caenorhabditis briggsae Caenorhabditis elegans Output by: table of sequences as SimiTri Order results by sequence abunance BLAST e-value Report all hits 1st hit only Select data type BLAST bit score sequence expression Select databases to compare Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node1 Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node2 Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node3 Select data groups to compare Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node1 Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node2 Zeldia punctata Ascaris suum C. elegans Ancyclostoma canium Ancyclostoma ceylanicum Ascaris lumbricoides Brugia malayi Dirofilaria immitis Globodera pallida Globodera rostochiensis Haemonchus contortus Heterodera glycines Meloidogyne arenaria Meloidogyne chitwoodi Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Necator americanus Nippostrongylus brasiliensis Ostertagia ostertagi Onchocerca volvulus Pratylenchus penetrans Pristionchus pacificus Parastrongyloides penetrans Strongyloides ratti Strongyloides stercoralis Toxocara canis Trichinella spiralis Teladorsagia circumcincta Trichuris muris Trichuris vulpis ....Node3