| What is TardiBASE ? |
- A database resource currently being developed by Mark Blaxter, University of Edinburgh.
- Provides a simple easy-to-use access point to the publically available
tardigrade Hypsibius dujardini sequence and functional data.
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| Searching TardiBASE |
Cluster information can be retrieved from TardiBASE using
- A specific cluster ID or Genbank accesion number for a sequence of interest
- Simple text queries on precomputed blast annotations.
- Sequence similarity by searching the H.dujardini cluster sequences
- Library specific searching is currently being developed.
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| TardiBASE output |
- TardiBASE provides lists of sequence clusters which
fulfill the search criteria.
- Information on individual clusters include :
- library expression,
- consensus
build,
- precomputed blast results,
- sequence trace view
- predicted proten translation:- size, molecular weight, pI,
putative location, residue composition, domain identification.
- A novel phylogenetics tool (SimiTri) which enables a visual comparison of the phylogenetic relationships of
individual clusters has been developed for NemBASE and we are working to incorporate this feature into
TardiBASE.
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