News Overview Construction Searching Cluster Info. Protein Info. SimiTri Conf
What is TardiBASE ?

  • A database resource currently being developed by Mark Blaxter, University of Edinburgh.
  • Provides a simple easy-to-use access point to the publically available tardigrade Hypsibius dujardini sequence and functional data.

Searching TardiBASE

    Cluster information can be retrieved from TardiBASE using
  • A specific cluster ID or Genbank accesion number for a sequence of interest
  • Simple text queries on precomputed blast annotations.
  • Sequence similarity by searching the H.dujardini cluster sequences
  • Library specific searching is currently being developed.

TardiBASE output

  • TardiBASE provides lists of sequence clusters which fulfill the search criteria.
  • Information on individual clusters include :
    • library expression,
    • consensus build,
    • precomputed blast results,
    • sequence trace view
    • predicted proten translation:- size, molecular weight, pI, putative location, residue composition, domain identification.
  • A novel phylogenetics tool (SimiTri) which enables a visual comparison of the phylogenetic relationships of individual clusters has been developed for NemBASE and we are working to incorporate this feature into TardiBASE.