BaNG - Blaxter Nematode and Neglected Genomics

Developmental Biology
Mark Blaxter's Teaching WebSite

  at the Institute of Evolutionary Biology, University of Edinburgh
Courses:
Informatics MSc
Honours:
Bioinformatics MSc
 

Introduction to Caenorhabditis elegans

Introduction to Phylogenetics

Genome Sequencing and Annotation for Informatics MSc

MSc in Bioinformatics

The BTO

 

Developmental Biology 3 Practical

A mutant zoo

strain

locus

allele

chromosome

description

CB2

vab-1

e2

II

"variably abnormal": adult hermaphrodite head has a dorsal notch; incompleteley penetrant

CB66

unc-22

e66

IV

"uncoordinated"; nematodes twitch while moving; due to a defect in a muscle filament protein

CB189

unc-32

e189

III

"uncoordinated": nematodes coil ventrally on backing up; due to miswiring of the motor nervous system

CB14

dpy-6

e14

X

"dumpy"; nematodes are much shorter and fatter than wildtype

CB518

bli-5

e518

III

"blistered"; adults have cuticle blisters, especially on head; due to breakdown between layers of the cuticle; variable penetrance (more prevalent in older nematodes)

DA650

bor-1

g320

X

"bordering"; nematodes preferentially accumulate on the border between food and no food, also clump together; a mutant revealing a high degree of central nervous system integration

UL48

N2; glp-1::lacZ, rol-6

extrachromosomal element

"roller"; these nematodes are transgenic and carry an artificially introduced rol-6 mutant allele which causes them to have a twisted cuticle and thus to roll; the glp-1::lacZ means they also carry a marker enzyme gene under the control of the promoter of the glp-1 gene.

Muv and Vul Mutant Strains of C. elegans

Mutant strains

locus

chr

which is...

Strain

also carries

cell fate needed for

allele

phenotype

let-23

II

receptor tyr kinase

MT2123

req 1 2

n1045

cs Vul

let-60

IV

Ras protein

MT4866

req 1 2

n2021

14% Vul

lin-11

I

LIM homeo-domain

MT633

him-5 (e1647) V

req 2 (some)

n389

Vul

lin-12

III

lin-12/notch type receptor

MT688

unc-32 (e189) III; him-5 (e1647) V

req 2

n941

Vul

lin-15

X

unknown

MT309

req 3

n309

Muv

lin-8; lin-9

II;III

CB1322

synthetic Muv

n111; n112

ts Muv

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