Genomes & Genomics |
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| at the Institute of Evolutionary Biology, University of Edinburgh | ||
Introduction to Caenorhabditis elegans |
Introduction to Phylogenetics |
Genome Sequencing and Annotation for Informatics MSc |
MSc in Bioinformatics |
The BTO |
Genomes and Genomics Tech Session 1 [back to G&G Techsession 1 top page]
"Answers" to the questions asked (pdf) | A graphic of the assembly (pdf)
CAP3 results Courtesy of Tokyo Human Genome Center
Number of segment pairs = 4422; number of pairwise comparisons = 115 '+' means given segment; '-' means reverse complement Overlaps Containments No. of Constraints Supporting Overlap ******************* Contig 1 ******************** B_malayi_mito_clone48_reverse+ B_malayi_mito_clone18_forward+ is in B_malayi_mito_clone48_reverse+ ******************* Contig 2 ******************** B_malayi_mito_clone31_reverse+ B_malayi_mito_clone22_forward+ B_malayi_mito_clone41_forward+ is in B_malayi_mito_clone22_forward+ B_malayi_mito_clone13_forward+ B_malayi_mito_clone37_reverse- B_malayi_mito_clone44_reverse+ is in B_malayi_mito_clone37_reverse- B_malayi_mito_clone16_forward- is in B_malayi_mito_clone37_reverse- B_malayi_mito_clone42_reverse+ is in B_malayi_mito_clone37_reverse- B_malayi_mito_clone32_forward- is in B_malayi_mito_clone37_reverse- ******************* Contig 3 ******************** B_malayi_mito_clone20_forward+ B_malayi_mito_clone19_reverse- B_malayi_mito_clone3_reverse+ B_malayi_mito_clone26_forward+ B_malayi_mito_clone5_forward- B_malayi_mito_clone26_reverse- B_malayi_mito_clone2_reverse+ B_malayi_mito_clone29_forward+ B_malayi_mito_clone3_forward- B_malayi_mito_clone4_forward- is in B_malayi_mito_clone3_forward- B_malayi_mito_clone30_reverse+ B_malayi_mito_clone24_forward+ B_malayi_mito_clone1_reverse+ is in B_malayi_mito_clone24_forward+ B_malayi_mito_clone33_reverse+ is in B_malayi_mito_clone24_forward+ B_malayi_mito_clone34_forward+ B_malayi_mito_clone35_forward+ is in B_malayi_mito_clone34_forward+ B_malayi_mito_clone27_reverse+ is in B_malayi_mito_clone34_forward+ ******************* Contig 4 ******************** B_malayi_mito_clone17_forward+ B_malayi_mito_clone8_reverse+ B_malayi_mito_clone9_reverse+ is in B_malayi_mito_clone8_reverse+ ******************* Contig 5 ******************** B_malayi_mito_clone10_forward- B_malayi_mito_clone25_reverse+ B_malayi_mito_clone7_reverse+ is in B_malayi_mito_clone25_reverse+ B_malayi_mito_clone23_reverse+ is in B_malayi_mito_clone25_reverse+ B_malayi_mito_clone40_reverse+ is in B_malayi_mito_clone25_reverse+ B_malayi_mito_clone38_forward+ B_malayi_mito_clone39_reverse+ B_malayi_mito_clone25_forward- is in B_malayi_mito_clone39_reverse+ B_malayi_mito_clone8_forward- B_malayi_mito_clone6_reverse+ is in B_malayi_mito_clone8_forward- B_malayi_mito_clone38_reverse- B_malayi_mito_clone47_forward+ B_malayi_mito_clone7_forward- is in B_malayi_mito_clone47_forward+ ******************* Contig 6 ******************** B_malayi_mito_clone2_forward- B_malayi_mito_clone28_reverse+ ******************* Contig 7 ******************** B_malayi_mito_clone5_reverse- B_malayi_mito_clone6_forward+ B_malayi_mito_clone47_reverse+ ******************* Contig 8 ******************** B_malayi_mito_clone10_reverse+ B_malayi_mito_clone15_forward+ B_malayi_mito_clone13_reverse+ is in B_malayi_mito_clone15_forward+ B_malayi_mito_clone44_forward+ B_malayi_mito_clone46_reverse- B_malayi_mito_clone12_forward- B_malayi_mito_clone45_forward- B_malayi_mito_clone11_reverse+ is in B_malayi_mito_clone45_forward- B_malayi_mito_clone31_forward+ ******************* Contig 9 ******************** B_malayi_mito_clone21_reverse+ B_malayi_mito_clone1_forward+ is in B_malayi_mito_clone21_reverse+ DETAILED DISPLAY OF CONTIGS ******************* Contig 1 ******************** . : . : . : . : . : . : B_malayi_mito_clone4+ ATAGGCCATTGACGGATGGTTTGTACCACTTTGGTAATACACGATCACAAACCCATAAGC B_malayi_mito_clone1+ CCCATAAGC ____________________________________________________________ consensus ATAGGCCATTGACGGATGGTTTGTACCACTTTGGTAATACACGATCACAAACCCATAAGC . : . : . : . : . : . : B_malayi_mito_clone4+ CAAATATATATCTGTTTTAAATGACAAAACATAAAAGCATTACAAATAAAATAAAAACTA B_malayi_mito_clone1+ CAAATATATATCTGTTTTAAATGACAAAACATAAAAGCATTACAAATAAAATAAAAACTA ____________________________________________________________ consensus CAAATATATATCTGTTTTAAATGACAAAACATAAAAGCATTACAAATAAAATAAAAACTA . : . : . : . : . : . : B_malayi_mito_clone4+ AACAATCATACATGTGCCAATAGAGTTAACTAAAAAGGAGGGCTCTCCATACGCATATTC B_malayi_mito_clone1+ AACAATCATACATGTGCCAATAGAGTTAACTAAAAAGGAGGGCTCTCCATACGCATATTC ____________________________________________________________ consensus AACAATCATACATGTGCCAATAGAGTTAACTAAAAAGGAGGGCTCTCCATACGCATATTC . : . : . : . : . : . : B_malayi_mito_clone4+ CAAAGAAAAATCCAAAGTCAGTCAATATTGCTTCGGTTTAAATAAAACTTTACTCCCGAA B_malayi_mito_clone1+ CAAAGAAAAATCCAAAGTCAGTCAATATTT-TTCGGTTTAAATAAAACTTTACTCCCGAA ____________________________________________________________ consensus CAAAGAAAAATCCAAAGTCAGTCAATATTGCTTCGGTTTAAATAAAACTTTACTCCCGAA . : . : . : . : . : . : B_malayi_mito_clone4+ TTAATTAATTTTGATTACCTGGGTACTAATCCAGTTCAAAAACCAAATTTTAATTGTCTC B_malayi_mito_clone1+ TTAATTACTT--GATTACCTGGGTACTAATCCAGTTCAAAAACCAAATTTTAATTGTCTC ____________________________________________________________ consensus TTAATTAATTTTGATTACCTGGGTACTAATCCAGTTCAAAAACCAAATTTTAATTGTCTC . : . : . : . : . : . : B_malayi_mito_clone4+ TTCGTATAGCCGATTATTCTGGAACACTTATAAAACAATCAAAAAACTACCAGTGAA--- B_malayi_mito_clone1+ TTCGTATAGCCGATTATTCTGGAACACTTATAAAACAATCAAAAAACTACCAGTGAACAA ____________________________________________________________ consensus TTCGTATAGCCGATTATTCTGGAACACTTATAAAACAATCAAAAAACTACCAGTGAACAA . : . : . : . : . : . : B_malayi_mito_clone4+ ---ATTACACATTAAATAAACTAAAAATAAGTAATATTATCTTAATACAACCAAAACCAA B_malayi_mito_clone1+ AAAATTACACATTAAATAAACTAAAAATAAGTAATATTATCTTAATACAACCAAAACCAA ____________________________________________________________ consensus AAAATTACACATTAAATAAACTAAAAATAAGTAATATTATCTTAATACAACCAAAACCAA . : . : . : . : . : . : B_malayi_mito_clone4+ AATCAAACCATAACCTTATCAACACCAAAACTTTTA B_malayi_mito_clone1+ AATCAAAC ____________________________________________________________ consensus AATCAAACCATAACCTTATCAACACCAAAACTTTTA ******************* Contig 2 ******************** . : . : . : . : . : . : B_malayi_mito_clone3+ GAACTAGATTTGTTGTTAAATGTTTATTAAAAACTTAGGTTTTTTTTTAAAGTTGTCTTC B_malayi_mito_clone2+ GAACTAGATTTGTTGTTAAATGTTTATTAAAAACTTAGGTTTTTTTTTAAAGTTGTCTTC B_malayi_mito_clone4+ GAACTAGATTTGTTGTTAAATGTTTATTAAAAACTTAGGTTTTTTTTTAAAGTTGTCTTC B_malayi_mito_clone1+ AACTTAGGTTTTTTTTTAAAGTTGTCTTC ____________________________________________________________ consensus GAACTAGATTTGTTGTTAAATGTTTATTAAAAACTTAGGTTTTTTTTTAAAGTTGTCTTC . : . : . : . : . : . : B_malayi_mito_clone3+ TGCTCTATGATTTTTTTAAATGGCAGCCTTAGCGTGATGGCATCAAAGTAGCGTAAGTGA B_malayi_mito_clone2+ TGCTCTATGATTTTTTTAAATGGCAGCCTTAGCGTGATGGCATCAAAGTAGCGTAAGTGA B_malayi_mito_clone4+ TGCTCTATGATTTTTTTAAATGGCAGCCTTAGCGTGATGGCATCAAAGTAGCGTAAGTGA B_malayi_mito_clone1+ TGCTCTATGATTTTTTTAAATGGCAGCCTTAGCGTGATGGCATCAAAGTAGCGTAAGTGA ____________________________________________________________ consensus TGCTCTATGATTTTTTTAAATGGCAGCCTTAGCGTGATGGCATCAAAGTAGCGTAAGTGA . : . : . : . : . : . : B_malayi_mito_clone3+ TTTGTTTTTTTATTGTTTTCAAGTATGAATGGAGTTTTTAGC B_malayi_mito_clone2+ TTTGTTTTTTTATTGTTTTCAAGTATGAATGGAGTTTTTAGCGATTGTAATATTACAAAG B_malayi_mito_clone4+ TTTGTTTTTTTATTGTTTTCAAGTATGAATGGAGTTTTTAGCGATTGTAATATTACAAAG B_malayi_mito_clone1+ TTTGTTTTTTTATTGTTTTCAAGTATGAATGGAGTTTTTAGCGATTGTAATATTACAAAG B_malayi_mito_clone3- GATTGTAATATTACAAAG B_malayi_mito_clone4+ GATTGTAATATTACAAAG B_malayi_mito_clone3- GATTGTAATATTACAAAG ____________________________________________________________ consensus TTTGTTTTTTTATTGTTTTCAAGTATGAATGGAGTTTTTAGCGATTGTAATATTACAAAG . : . : . : . : . : . : B_malayi_mito_clone2+ ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG B_malayi_mito_clone4+ ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGG B_malayi_mito_clone1+ ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG B_malayi_mito_clone3- ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG B_malayi_mito_clone1- TACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG B_malayi_mito_clone4+ ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG B_malayi_mito_clone3- ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG ____________________________________________________________ consensus ATAAGTCTTCGGAAATACTAATATTTTCTTGGGGATGGCTCCGGAGTTAACAGGGTTGTG . : . : . : . : . : . : B_malayi_mito_clone2+ GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT B_malayi_mito_clone1+ GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT B_malayi_mito_clone3- GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT B_malayi_mito_clone1- GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT B_malayi_mito_clone4+ GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT B_malayi_mito_clone3- GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT ____________________________________________________________ consensus GACATCTAAATAGTTTTTTTATATTAGTGTGCTGCGCTACATCGATGTTGTATATTTTTT . : . : . : . : . : . : B_malayi_mito_clone2+ ATGAAAAG B_malayi_mito_clone1+ ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG B_malayi_mito_clone3- ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG B_malayi_mito_clone1- ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG B_malayi_mito_clone4+ ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG B_malayi_mito_clone3- ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG ____________________________________________________________ consensus ATGAAAAGAGAGAGAATTTTTTTTTTTGAGACTGTTCTTCTTGTATAAAAAATGAACTTG . : . : . : . : . : . : B_malayi_mito_clone1+ ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTG B_malayi_mito_clone3- ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTGTATATTTATTTGTTTTTAT B_malayi_mito_clone1- ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTGTATATTTATTTGTTTTTAT B_malayi_mito_clone4+ ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTGTATATTTATTTGTTTTTAT B_malayi_mito_clone3- ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTGTATATTTATTTGTTTTTAT ____________________________________________________________ consensus ATATTAGTTTAGTTCGTCGTGAGACAGAGCGGTTTATCTTGTATATTTATTTGTTTTTAT . : . : . : . : . : . : B_malayi_mito_clone3- CGGGATAAGTACGAAAGGAAAATTATGAAGGTTAATATTTATGAATAAATTTGTTGATTT B_malayi_mito_clone4+ ATAAATTTGTTGATTT B_malayi_mito_clone1- CGGGATAACTACGAAAGGAAAATTATGAAGGTTAATATTTATGAATAAATTTGTTGATTT B_malayi_mito_clone4+ CGGGATAAGTACGAAAGGAAAATTATGAAGGTTAATATTTATGA B_malayi_mito_clone3- CGGGATAAGTACGAAAGGAAAATTATGAAGGTTAATATTTATGAATAAATTTGTTGATTT ____________________________________________________________ consensus CGGGATAAGTACGAAAGGAAAATTATGAAGGTTAATATTTATGAATAAATTTGTTGATTT . : . : . : . : . : . : B_malayi_mito_clone3- TGGCAAATTAAGTTCTTATGAGTGTGGTTTTGATTTATCTTTGAGGGTTCGGGATAGTTT B_malayi_mito_clone4+ TGGCAAATTAAGTTCTTATGAGTGTGGTTTTGATTTATCTTTGAGGGTTCGGGA B_malayi_mito_clone1- TGGCAAATTAAGTTC B_malayi_mito_clone3- TGGCAAATTAAGTTCTTATGAGTGTGGTTTTGATTTATCTTTGAGGGTTCGGGA ____________________________________________________________ consensus TGGCAAATTAAGTTCTTATGAGTGTGGTTTTGATTTATCTTTGAGGGTTCGGGATAGTTT . : . : . : . : . : . : B_malayi_mito_clone3- TAGTGTTGTTTTTTTTTTAATTGTTTTGATTTTTGTTGTTTTTGAATTGGAGGCAGGGTG ____________________________________________________________ consensus TAGTGTTGTTTTTTTTTTAATTGTTTTGATTTTTGTTGTTTTTGAATTGGAGGCAGGGTG . : . : . : . : . : . : B_malayi_mito_clone3- ATTTTTATGGTATTTTTTCTTTTTTTTTGTTTTTTCTT ____________________________________________________________ consensus ATTTTTATGGTATTTTTTCTTTTTTTTTGTTTTTTCTT ******************* Contig 3 ******************** . : . : . : . : . : . : B_malayi_mito_clone2+ AAATACTTAAAAAATCATAATCAAAATTTAGCCATAATTATAATAATAATTACAGCCAGA B_malayi_mito_clone1- TAGCCATAATTATAATAATAATTACAGCCAGA ____________________________________________________________ consensus AAATACTTAAAAAATCATAATCAAAATTTAGCCATAATTATAATAATAATTACAGCCAGA . : . : . : . : . : . : B_malayi_mito_clone2+ AATACTACAAAAATAAGTTAACAAAGAAAAAATACCACTCAAAAAAATCAATACAATAAA B_malayi_mito_clone1- AATACTACAAAAATAAGTTAACAAAGAAAAAATACCACTCAAAAAA-TCAATACAATAAA B_malayi_mito_clone3+ AAAAAATCAATACAATAAA ____________________________________________________________ consensus AATACTACAAAAATAAGTTAACAAAGAAAAAATACCACTCAAAAAAATCAATACAATAAA . : . : . : . : . : . : B_malayi_mito_clone2+ ATAAGAATATCACACATGAACACCCAAAGAAATATAACAACTTATAAATAAAATACCTAA B_malayi_mito_clone1- ATAAGAATATCACACATGAACACCCAAAGAAATATAACAACTTATAAATAAAATACCTAA B_malayi_mito_clone3+ ATAAGAATATCACACATGAACACCCAAAGAAATATAACAACTTATAAATAAAATACCTAA ____________________________________________________________ consensus ATAAGAATATCACACATGAACACCCAAAGAAATATAACAACTTATAAATAAAATACCTAA . : . : . : . : . : . : B_malayi_mito_clone2+ ACATA B_malayi_mito_clone1- ACATATCATGATGCAACTTTTCATA B_malayi_mito_clone3+ ACATATCATGATGCAACTTTTCATAGGATCCCAATCTAAAAAACTTAAGCAAAAAGTCAA ____________________________________________________________ consensus ACATATCATGATGCAACTTTTCATAGGATCCCAATCTAAAAAACTTAAGCAAAAAGTCAA . : . : . : . : . : . : B_malayi_mito_clone3+ AAAATCCAAAATAAAAAATTCTATAACTTTAAAAAATAGAATAAAATCTTTAGTTTTGAA ____________________________________________________________ consensus AAAATCCAAAATAAAAAATTCTATAACTTTAAAAAATAGAATAAAATCTTTAGTTTTGAA . : . : . : . : . : . : B_malayi_mito_clone3+ AACTAAAAGTTTAAAAATTTAACCTAAATCTACAACTACTTACTATAATAACCATAACCA ____________________________________________________________ consensus AACTAAAAGTTTAAAAATTTAACCTAAATCTACAACTACTTACTATAATAACCATAACCA . : . : . : . : . : . : B_malayi_mito_clone3+ ACACGACGGTATCTATAACTAGGGGTATTCTTACAAAAAACCTTTCAACATAGACCATAA B_malayi_mito_clone2+ ACCATAA ____________________________________________________________ consensus ACACGACGGTATCTATAACTAGGGGTATTCTTACAAAAAACCTTTCAACATAGACCATAA . : . : . : . : . : . : B_malayi_mito_clone3+ CCTAAAATATCTTCCAAAAAAGAATCAGGTAGAGGAGGGACATTAGAGACATAAGA B_malayi_mito_clone2+ CCTAAAATATCTTCCAAAAAAGAATCAGGTAGAGGAGGGACATTAGAGACATAAGAAGGA ____________________________________________________________ consensus CCTAAAATATCTTCCAAAAAAGAATCAGGTAGAGGAGGGACATTAGAGACATAAGAAGGA . : . : . : . : . : . : B_malayi_mito_clone2+ CTATGACCATTATAGAAAGAAATACCTAAAAAACGAGAAAAAAAAATAGAATCAATCATC ____________________________________________________________ consensus CTATGACCATTATAGAAAGAAATACCTAAAAAACGAGAAAAAAAAATAGAATCAATCATC . : . : . : . : . : . : B_malayi_mito_clone2+ AAATAATTAAATAATATAAAGCCAATAAAAGTAATAACAGAACCTAAAGAAGAAAAAACT B_malayi_mito_clone5- AATAATTAAATAATATAAAGCCAATAAAAGTAATAACAGAACCTAAAGAAGAAAAAACT ____________________________________________________________ consensus AAATAATTAAATAATATAAAGCCAATAAAAGTAATAACAGAACCTAAAGAAGAAAAAACT . : . : . : . : . : . : B_malayi_mito_clone2+ TGAAACATAGAATAGCAATCAGGATAATCTAAAACCTTACGAGGTATTCCCTGTATGCCA B_malayi_mito_clone5- TGAAACATAGAATAGCAATCAGGATAATCTAAAACCTTACGAGGTATTCCCTGTATGCCA ____________________________________________________________ consensus TGAAACATAGAATAGCAATCAGGATAATCTAAAACCTTACGAGGTATTCCCTGTATGCCA . : . : . : . : . : . : B_malayi_mito_clone2+ GCAAAATGCATAGGAAAAAAAGTCATATTAGTACCAATAAAAAAACAAAAAAAAATAGCA B_malayi_mito_clone5- GCAAAATGCATAGGAAAAAAAGTCATATTAGTACCAATAAAAAAACAAAAAAAAATAGCA ____________________________________________________________ consensus GCAAAATGCATAGGAAAAAAAGTCATATTAGTACCAATAAAAAAACAAAAAAAAATAGCA . : . : . : . : . : . : B_malayi_mito_clone2+ ATCATCAACAAACCATCGAAAGAGACACCATACATATAAGGCAACCATAAACAAAATCCA B_malayi_mito_clone5- ATCATCAACAAACCATCGAAAGAGACACCATACATATAAGGCAACCATAAACAAAATCCA ____________________________________________________________ consensus ATCATCAACAAACCATCGAAAGAGACACCATACATATAAGGCAACCATAAACAAAATCCA . : . : . : . : . : . : B_malayi_mito_clone2+ CAAAAAATACCATAAACAGCTCCCAAACTTAAAGTGTAATGAAAATGAGCTACAACATAA B_malayi_mito_clone5- CAAAAAATACCATAAACAGCTCCCAAACTTAAAGTGTAATGAAAATGAGCTACAACATAA ____________________________________________________________ consensus CAAAAAATACCATAAACAGCTCCCAAACTTAAAGTGTAATGAAAATGAGCTACAACATAA . : . : . : . : . : . : B_malayi_mito_clone2+ TAAGTATCATGTAACACCACATCTAAGCTAGCCGCTCTCAA B_malayi_mito_clone5- TAAGTATCATGTAACACCACATCTAAGCTAGCCGCTCTCAAAATAATTCCACTTAAACCA B_malayi_mito_clone2- TAACACCACATCTAAGCTAGCCGCTCTCAAAATAATTCCACTTAAACCA ____________________________________________________________ consensus TAAGTATCATGTAACACCACATCTAAGCTAGCCGCTCTCAAAATAATTCCACTTAAACCA . : . : . : . : . : . : B_malayi_mito_clone5- CCAACAGTAAAAAGAAAAATAAAACTATAAGTTCAGCA B_malayi_mito_clone2- CCAACAGTAAAAAGAAAAATAAAACTATAAGTTCAGCATCATAACGGCTGCATTTTTTGG ____________________________________________________________ consensus CCAACAGTAAAAAGAAAAATAAAACTATAAGTTCAGCATCATAACGGCTGCATTTTTTGG . : . : . : . : . : . : B_malayi_mito_clone2- TTTGAACCAAAAAAAGTACCCAACCAATTAAAAATTTTCACAGCTCTAGGAATAGCAATA B_malayi_mito_clone2+ CAATTAAAAATTTTCACAGCTCTAGGAATAGCAATA ____________________________________________________________ consensus TTTGAACCAAAAAAAGTACCCAACCAATTAAAAATTTTCACAGCTCTAGGAATAGCAATA . : . : . : . : . : . : B_malayi_mito_clone2- ATTATAGTGGCAGCTCTAAAATAAGTACGAGTATCAATATCCAAACCAGCTGTATACATA B_malayi_mito_clone2+ ATTATAGTGGCAGCTCTAAAATAAGTACGAGTATCAATATCCAAACCAGCTGTATACATA ____________________________________________________________ consensus ATTATAGTGGCAGCTCTAAAATAAGTACGAGTATCAATATCCAAACCAGCTGTATACATA . : . : . : . : . : . : B_malayi_mito_clone2- TGGTGACCTCAAACAGATGTACCTAGAACAGCAATTCAAATAGAAGCAAAAGTCATACTA B_malayi_mito_clone2+ TGGTGACCTCAAACAGATGTACCTAGAACAGCAATTCAAATAGAAGCAAAAGTCATACTA ____________________________________________________________ consensus TGGTGACCTCAAACAGATGTACCTAGAACAGCAATTCAAATAGAAGCAAAAGTCATACTA . : . : . : . : . : . : B_malayi_mito_clone2- GTTTGACCAAATAAACGATCCTTGTCAGTTAGAAACAAAACAGCCTCACTAATAATACCA B_malayi_mito_clone2+ GTTTGACCAAATAAACGATCCTTGTCAGTTAGAAACAAAACAGCCTCACTAATAATACCA ____________________________________________________________ consensus GTTTGACCAAATAAACGATCCTTGTCAGTTAGAAACAAAACAGCCTCACTAATAATACCA . : . : . : . : . : . : B_malayi_mito_clone2- AAGACAGGTAAAATAATAACATAAACTTCTGGGTGCCCAAAAAACCAAAATAAATGCTGA B_malayi_mito_clone2+ AAGACAGGTAAAATAATAACATAAACTTCTGGGTGCCCAAAAAACCAAAATAAATGCTGA ____________________________________________________________ consensus AAGACAGGTAAAATAATAACATAAACTTCTGGGTGCCCAAAAAACCAAAATAAATGCTGA . : . : . : . : . : . : B_malayi_mito_clone2- TACAATAATGGATTACCACCATTTTTAGTATCATAAAAAGAAGTATTAAAATTACGATCA B_malayi_mito_clone2+ TACAATAATGGATTACCACCATTTTTAGTATCATAAAAAGAAGTATTAAAATTACGATCA B_malayi_mito_clone2+ GAAGTATTAAAATTACGATCA ____________________________________________________________ consensus TACAATAATGGATTACCACCATTTTTAGTATCATAAAAAGAAGTATTAAAATTACGATCA . : . : . : . : . : . : B_malayi_mito_clone2- AACAGTAAAAACAACAAAGAACCTGCC B_malayi_mito_clone2+ AACAGTAAAAACAACAAAGAACCTGCCAAAACTGGAACAGATAACACCAGCAAAAAAGAA B_malayi_mito_clone2+ AACAGTAAAAACAACAAAGAACCTGCCAAAACTGGAACAGATAACACCAGCAAAAAAGAA ____________________________________________________________ consensus AACAGTAAAAACAACAAAGAACCTGCCAAAACTGGAACAGATAACACCAGCAAAAAAGAA . : . : . : . : . : . : B_malayi_mito_clone2+ GTCAAATAAGAAGTCCAAACAAATATACTTGCCTGA B_malayi_mito_clone2+ GTCAAATAAGAAGTCCAAACAAATATACTTGCCTGATCTAAAGTGACAGCAACAGAACGC ____________________________________________________________ consensus GTCAAATAAGAAGTCCAAACAAATATACTTGCCTGATCTAAAGTGACAGCAACAGAACGC . : . : . : . : . : . : B_malayi_mito_clone2+ ATATTTTGAGTAGTAACTATAAAATTAATAGCACCAAACAAAGAACCAATCCCTACAGTA ____________________________________________________________ consensus ATATTTTGAGTAGTAACTATAAAATTAATAGCACCAAACAAAGAACCAATCCCTACAGTA . : . : . : . : . : . : B_malayi_mito_clone2+ TGCAACCCCAAAATTATAACATCTAAAGAAACTTCTGGCTGACCCTCTACTCTTAAAGGA B_malayi_mito_clone3- TTAAAGGA ____________________________________________________________ consensus TGCAACCCCAAAATTATAACATCTAAAGAAACTTCTGGCTGACCCTCTACTCTTAAAGGA . : . : . : . : . : . : B_malayi_mito_clone2+ GGATAAAAAGTTCAACTACTTCCTGGTCCACCACCAATAAAAAAAGACTGATAAACCATC B_malayi_mito_clone3- GGATAAAAAGTTCAACTACTTCCTGGTCCACCACCAATAAAAAAAGACTGATAAACCATC B_malayi_mito_clone4- AAAAAAGACTGATAAACCATC ____________________________________________________________ consensus GGATAAAAAGTTCAACTACTTCCTGGTCCACCACCAATAAAAAAAGACTGATAAACCATC . : . : . : . : . : . : B_malayi_mito_clone2+ AACAAAGCCACAAAAGTAAACCAAAAAGATAAAGCATTTACCCGAGGAAAAGCCATCTCT B_malayi_mito_clone3- AACAAAGAAACAAAAGTAAACCAAAAAGATAAAGCATTTACCCGAGGAAAAGCCATCTCT B_malayi_mito_clone4- AACAAAGCCACAAAAGTAAACCAAAAAGATAAAGCATTTACCCGAGGAAAAGCCATCTCT ____________________________________________________________ consensus AACAAAGCCACAAAAGTAAACCAAAAAGATAAAGCATTTACCCGAGGAAAAGCCATCTCT . : . : . : . : . : . : B_malayi_mito_clone2+ GGAGCACCAAGTATAACAGGTAATATTCAATTACCAAAACCGCCGATCAAAATAGGCATC B_malayi_mito_clone3- GGAGCACCAAGTATAACAGGTAATATTCAATTACCAAAACCGCCGATCAAAATAGGCATC B_malayi_mito_clone4- GGAGCACCAAGTATAACAGGTAATATTCAATTACCAAAACCGCCGATCAAAATAGGCATC B_malayi_mito_clone3+ AGTATAACAGGTAATATTCAATTACCAAAACCGCCGATCAAAATAGGCATC ____________________________________________________________ consensus GGAGCACCAAGTATAACAGGTAATATTCAATTACCAAAACCGCCGATCAAAATAGGCATC . : . : . : . : . : . : B_malayi_mito_clone2+ ACTATAAAAAAAATCATTAAAACCCCATG B_malayi_mito_clone3- ACTATAAAAAAAATCATTAAAACCCCATGCATAGTTAAAACAGAATTATATACTTGACCA B_malayi_mito_clone4- ACTATAAAAAAAATCATTAAAACCCCATGCATAGTTAAAACAGAATTATATACTTGACCA B_malayi_mito_clone3+ ACTATAAAAAAAATCATTAAAACCCCATGCATAGTTAAAACAGAATTATATACTTGACCA ____________________________________________________________ consensus ACTATAAAAAAAATCATTAAAACCCCATGCATAGTTAAAACAGAATTATATACTTGACCA . : . : . : . : . : . : B_malayi_mito_clone3- CTACCAAAAAACAAATAACCACCAGGCCTAGAGAGCTCAAAACGAATAATTATAGATAAT B_malayi_mito_clone4- CTACCAAAAAACAAATAACCACCAGGCCTAGAGAGCTCAAAACGAATAATTATAGATAAT B_malayi_mito_clone3+ CTACCAAAAAACAAATAACCACCAGGCCTAGAGAGCTCAAAACGAATAATTATAGATAAT ____________________________________________________________ consensus CTACCAAAAAACAAATAACCACCAGGCCTAGAGAGCTCAAAACGAATAATTATAGATAAT . : . : . : . : . : . : B_malayi_mito_clone3- AAAGATCCACCTAAGCCTGCCCAGTAACCTAAAACAATATAATAAGTACCAATAGTCTTA B_malayi_mito_clone4- AAAGATCCACCTAAGCCTGCCCAGTAACCTAAAACAATATAATAAGTACCAATAGTCTTA B_malayi_mito_clone3+ AAAGATCCACCTAAGCCTGCCCAGTAACCTAAAACAATATAATAAGTACCAATAGTCTTA ____________________________________________________________ consensus AAAGATCCACCTAAGCCTGCCCAGTAACCTAAAACAATATAATAAGTACCAATAGTCTTA . : . : . : . : . : . : B_malayi_mito_clone3- TGATTAACAGTATTAATAATCCTCTGCTTTAATACATTACCAAAAGTCATACCAC B_malayi_mito_clone4- TGATTAACAGTATTAATAATCCTCTGCTTTAATACATTACCAAA B_malayi_mito_clone3+ TGATTAACAGTATTAATAATCCTCTGCTTTAATACATTACCAAAAGTCATACCACCCATA ____________________________________________________________ consensus TGATTAACAGTATTAATAATCCTCTGCTTTAATACATTACCAAAAGTCATACCACCCATA . : . : . : . : . : . : B_malayi_mito_clone3+ AAAATTAAAGGTAAACAAACAACAGCCCGGCTATCACAAACATACCTAACTTTATTGCCT ____________________________________________________________ consensus AAAATTAAAGGTAAACAAACAACAGCCCGGCTATCACAAACATACCTAACTTTATTGCCT . : . : . : . : . : . : B_malayi_mito_clone3+ ACCCAAATTAATACTAAAATAACCTCGCAAATAATAAACTAATCGACTTCTAGCAATATG B_malayi_mito_clone2+ CAAATTAATACTAAAATAACCTCGCAAATAATAAACTAATCGACTTCTAGCAATATG B_malayi_mito_clone1+ CAAATTAATACTAAAATAACCTCGCAAATAATAAACTAATCGACTTCTAGCAATATG B_malayi_mito_clone3+ CTTCTAGCAATATG ____________________________________________________________ consensus ACCCAAATTAATACTAAAATAACCTCGCAAATAATAAACTAATCGACTTCTAGCAATATG . : . : . : . : . : . : B_malayi_mito_clone3+ ATAAAACTCA B_malayi_mito_clone2+ ATAAAACTCACCAATAAAATAAAATATCAAAACAGAAGTATATCCATGAGATAATATCAT B_malayi_mito_clone1+ ATAAAACTCACCAATAAAATAAAATATCAAAACAGAAGTATATCCATGAGATAATATCAT B_malayi_mito_clone3+ ATAAAACTCACCAATAAAATAAAATATCAAAACAGAAGTATATCCATGAGATAATATCAT ____________________________________________________________ consensus ATAAAACTCACCAATAAAATAAAATATCAAAACAGAAGTATATCCATGAGATAATATCAT . : . : . : . : . : . : B_malayi_mito_clone2+ AATTAAAGCTATAGACTTGCCGTAATACAATATACTAATCTCAGATAATAAAACAAATCC B_malayi_mito_clone1+ AATTAAAGCTATAGACTTGCCGTAATACAATATACTAATCTCAGATAATAAAACAAATCC B_malayi_mito_clone3+ AATTAAAGCTATAGACTTGCCGTAATACAATATACTAATCTCAGATAATAAAACAAATCC ____________________________________________________________ consensus AATTAAAGCTATAGACTTGCCGTAATACAATATACTAATCTCAGATAATAAAACAAATCC . : . : . : . : . : . : B_malayi_mito_clone2+ TATATGACAAATAGAAGAATAAGCAGCCAAAGACTTACAATCACTTTGAAAAATACAAAT B_malayi_mito_clone1+ TATATGACAAATAGA B_malayi_mito_clone3+ TATATGACAAATAGAAGAATAAGCAGCCAAAGACTTACAATCACTTTGAAAAATACAAAT B_malayi_mito_clone3+ ATCACTTTGAAAAATACAAAT ____________________________________________________________ consensus TATATGACAAATAGAAGAATAAGCAGCCAAAGACTTACAATCACTTTGAAAAATACAAAT . : . : . : . : . : . : B_malayi_mito_clone2+ AAAAGAACAAAAAACTATCCCAATTAAAGAAAAAAAAACTAATAATTCAAAACCAAAAAA B_malayi_mito_clone3+ AAAAGAACAAAAAACTATCCCAATTAAAGAAAAAAAAACTAATAATTCAAAACCAAAAAA B_malayi_mito_clone3+ AAAAGAACAAAAAACTATCCCAATTAAAGAAAAAAAAACTAATAATTCAAAACCAAAAAA ____________________________________________________________ consensus AAAAGAACAAAAAACTATCCCAATTAAAGAAAAAAAAACTAATAATTCAAAACCAAAAAA . : . : . : . : . : . : B_malayi_mito_clone2+ ATTCAAAGATTTCCTAATACGGTAAATACCGGCTCCACCTAATTTCAATATCACTCCAGC B_malayi_mito_clone3+ ATTCAAAGATTTCCTAATACGGTAAATACCGGCTCCACCTAATTTCAATATCACTCCAGC B_malayi_mito_clone3+ ATTCAAAGATTTCCTAATACGGTAAATACCGGCTCCACCTAATTTCAATATCACTCCAGC ____________________________________________________________ consensus ATTCAAAGATTTCCTAATACGGTAAATACCGGCTCCACCTAATTTCAATATCACTCCAGC . : . : . : . : . : . : B_malayi_mito_clone2+ TAAAACTATACTAGTTCTAGTGGGAGATTCAACATGAACCTTAGGTAATCAAGCATGCAA B_malayi_mito_clone3+ TAAAACTATACTAGTTCTAGTGGGAGATTCAACAT B_malayi_mito_clone3+ TAAAACTATACTAGTTCTAGTGGGAGATTCAACATGAACCTTAGGTAATCAAGCATGCAA ____________________________________________________________ consensus TAAAACTATACTAGTTCTAGTGGGAGATTCAACATGAACCTTAGGTAATCAAGCATGCAA . : . : . : . : . : . : B_malayi_mito_clone2+ AAAATATACAGGAAATTTAACCAAAAAACATAAACTTAACAAAAAAACCAACTCAAAAGC B_malayi_mito_clone3+ AAAATATACAGGAAATTTAACCAAAAAACATAAACTTAACAAAAAAACCAACTCAAAAGC ____________________________________________________________ consensus AAAATATACAGGAAATTTAACCAAAAAACATAAACTTAACAAAAAAACCAACTCAAAAGC . : . : . : . : . : . : B_malayi_mito_clone2+ ATGGCT B_malayi_mito_clone3+ ATGGCTAAAAAAAAACAAAAATGGTATACCAAAAAATAAGGTATAAAATACCAAATAATA B_malayi_mito_clone3+ AAAAATGGTATACCAAAAAATAAGGTATAAAATACCAAATAATA B_malayi_mito_clone2+ AAAAATGGTATACCAAAAAATAAGGTATAAAATACCAAATAATA ____________________________________________________________ consensus ATGGCTAAAAAAAAACAAAAATGGTATACCAAAAAATAAGGTATAAAATACCAAATAATA . : . : . : . : . : . : B_malayi_mito_clone3+ ACAAGCCCTGATCTTCTCAACCTGACGACCATAACCTAATAAACAAAATAAAACAGGCAG B_malayi_mito_clone3+ ACAAGCCCTGATCTTCTCAACCTGACGACCATAACCTAATAAACAAAATAAAACAGGCAG B_malayi_mito_clone2+ ACAAGCCCTGATCTTCTCAACCTGACGACCATAACCTAATAAACAAAATAAAACAGGCAG ____________________________________________________________ consensus ACAAGCCCTGATCTTCTCAACCTGACGACCATAACCTAATAAACAAAATAAAACAGGCAG . : . : . : . : . : . : B_malayi_mito_clone3+ CATAGTTAATTCGTAAAAAATATATAAAATCAAAAAACTTCCAGAAAAAAAA B_malayi_mito_clone3+ CATAGTTAATTCGTAAAAAATATATAAAATCAAAAAACTTCCAG B_malayi_mito_clone2+ CATAGTTAATTCGTAAAAAATATATAAAATCAAAAAACTTCCAG ____________________________________________________________ consensus CATAGTTAATTCGTAAAAAATATATAAAATCAAAAAACTTCCAGAAAAAAAA ******************* Contig 4 ******************** . : . : . : . : . : . : B_malayi_mito_clone1+ CACAACAAGAAAAATTAAAAGTAATTTTAGTCAATAAACCATTCAAGGCATCCATCTTAA ____________________________________________________________ consensus CACAACAAGAAAAATTAAAAGTAATTTTAGTCAATAAACCATTCAAGGCATCCATCTTAA . : . : . : . : . : . : B_malayi_mito_clone1+ CAAAACACTTAGGTACAGCAAAAGAATGAATCACGTCCCTAGAAGTACAATACAGCCCGA ____________________________________________________________ consensus CAAAACACTTAGGTACAGCAAAAGAATGAATCACGTCCCTAGAAGTACAATACAGCCCGA . : . : . : . : . : . : B_malayi_mito_clone1+ TGTTGGCACCAATAGGTAGGACACAACGATTATCAACATCAAATAGCCGAAAATCACCCA ____________________________________________________________ consensus TGTTGGCACCAATAGGTAGGACACAACGATTATCAACATCAAATAGCCGAAAATCACCCA . : . : . : . : . : . : B_malayi_mito_clone1+ AACTTAAATCATCTACAGGCTTTATAAAAGAATCAAAAACTAATCTACTATCGTCACCAT ____________________________________________________________ consensus AACTTAAATCATCTACAGGCTTTATAAAAGAATCAAAAACTAATCTACTATCGTCACCAT . : . : . : . : . : . : B_malayi_mito_clone1+ ATTCATAACTTCAATATCACTGATGACCGATAACCTTTAAAGTTAATTCAGACTGACGAA B_malayi_mito_clone8+ TCACTGATGACCGATAACCTTTAAAGTTAATTCAGACTGACGAA ____________________________________________________________ consensus ATTCATAACTTCAATATCACTGATGACCGATAACCTTTAAAGTTAATTCAGACTGACGAA . : . : . : . : . : . : B_malayi_mito_clone1+ ACATACGACCTTGATATTGGATCAACCAAAGGCCAGGTCCAGCTATGATAACCAAAAAAT B_malayi_mito_clone8+ ACATACGACCTTGATATTGGATCAACCAAAACCCAGGTCCAGCTATGATAACCAAAAAAT ____________________________________________________________ consensus ACATACGACCTTGATATTGGATCAACCAAAACCCAGGTCCAGCTATGATAACCAAAAAAT . : . : . : . : . : . : B_malayi_mito_clone1+ TAACAACTAAAACTTGCAAAATTAACTCAATTATACGACTATCACTACGCTTTAAATTGA B_malayi_mito_clone8+ TAACAACTAAAACTTGCAAAATTAACTCAATTATACGACTATCACTACGCTTTAAATTGA ____________________________________________________________ consensus TAACAACTAAAACTTGCAAAATTAACTCAATTATACGACTATCACTACGCTTTAAATTGA . : . : . : . : . : . : B_malayi_mito_clone1+ ACTTAAAAGAATTGCCATAAAAATACAAACCAAAACTTACCAAAA B_malayi_mito_clone8+ ACTTAAAAGAATTGCCATAAAAATACAAACCAAAACTTACCAAAAGTA--ATAAAAAAAC B_malayi_mito_clone9+ AAGAATTGCCATAAAAATACAAACCAAAACTTACCAAAAATATAATAAAAAAAC ____________________________________________________________ consensus ACTTAAAAGAATTGCCATAAAAATACAAACCAAAACTTACCAAAAATATAATAAAAAAAC . : . : . : . : . : . : B_malayi_mito_clone8+ CAAAAAAAATAACATGAGAATAATAATTATGGATAAAATAACAACAGAAAACATAAGAAT B_malayi_mito_clone9+ CAAAAAAAATAACATGAGAATAATAATTATGGATAAAATAACAACAGAAAACATAAGAAT ____________________________________________________________ consensus CAAAAAAAATAACATGAGAATAATAATTATGGATAAAATAACAACAGAAAACATAAGAAT . : . : . : . : . : . : B_malayi_mito_clone8+ TACTAGGAACAGGAAAAACATAATTTTGTAAATAAATTATTAGCTTAAAATCCTTTTGTT B_malayi_mito_clone9+ TACTAGGAACAGGAAAAACATAATTTTGTAAATAAATTATTAGCTTAAAATCCTTTTGTT ____________________________________________________________ consensus TACTAGGAACAGGAAAAACATAATTTTGTAAATAAATTATTAGCTTAAAATCCTTTTGTT . : . : . : . : . : . : B_malayi_mito_clone8+ TGGAAAACAAAAATACCAAAAATACTAAAAAGCCAAAAAAAAAAAAAAATATAACAAACC B_malayi_mito_clone9+ TGGAAAACAAAAATACCAAAAAT ____________________________________________________________ consensus TGGAAAACAAAAATACCAAAAATACTAAAAAGCCAAAAAAAAAAAAAAATATAACAAACC . : . : . : . : . : . : B_malayi_mito_clone8+ ATTGTCCTATCAAAACAAAATTCTTAACTTAAACTAC ____________________________________________________________ consensus ATTGTCCTATCAAAACAAAATTCTTAACTTAAACTAC ******************* Contig 5 ******************** . : . : . : . : . : . : B_malayi_mito_clone1- TAGGAACAGGAAAAACATAATTTTGTAAATAAATTATTAGCTTAAAATCCTTTTGTTTGG ____________________________________________________________ consensus TAGGAACAGGAAAAACATAATTTTGTAAATAAATTATTAGCTTAAAATCCTTTTGTTTGG . : . : . : . : . : . : B_malayi_mito_clone1- AAAACAAAAATACCAAAAATACTAAAAAGCCCAAACCATTGTCCTATCAAAACAAAATTC B_malayi_mito_clone2+ AAAAAAATTATAA----CAAACCATTGTCCTATCAAAACAAAATTC B_malayi_mito_clone7+ CAAACCATTGTCCTATCAAAACAAAATTC B_malayi_mito_clone2+ CAAACCATTGTCCTATCAAAACAAAATTC B_malayi_mito_clone4+ AAAAAAATTATAA----CAAACCATTGTCCTATCAAAACAAAATTC ____________________________________________________________ consensus AAAACAAAAATACCAAAAAAATTATAA----CAAACCATTGTCCTATCAAAACAAAATTC . : . : . : . : . : . : B_malayi_mito_clone1- TTAACTTAAACTACCATACAAATCAAAGTTAAAAAAATATAACTTTGCAAAAAAGCAAAA B_malayi_mito_clone2+ TTAACTTAAACTACCATACAAATCAAAGTTAAAAAAATATAACTTTGCAAAAAAGCAAAA B_malayi_mito_clone7+ TTAACTTAAACTACCATACAAATCAAAGTTAAAAAAATATAACTTTGCAAAAAAGCAAAA B_malayi_mito_clone2+ TTAACTTAAACTACCATACAAATCAAAGTTAAAAAAATATAACTTTGCAAAAAAGCAAAA B_malayi_mito_clone4+ TTAACTTAAACTACCATACAAATCAAAGTTAAAAAGGTATAACTTTGCAAAAAAGCAAAA ____________________________________________________________ consensus TTAACTTAAACTACCATACAAATCAAAGTTAAAAAAATATAACTTTGCAAAAAAGCAAAA . : . : . : . : . : . : B_malayi_mito_clone1- AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT B_malayi_mito_clone2+ AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT B_malayi_mito_clone7+ AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT B_malayi_mito_clone2+ AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT B_malayi_mito_clone4+ AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT ____________________________________________________________ consensus AACAATTCAACAGGTATAATAAACAATAAAGAAAAGAAAGAAAAGAAAAAGCCCAAATCT . : . : . : . : . : . : B_malayi_mito_clone1- AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA B_malayi_mito_clone2+ AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA B_malayi_mito_clone7+ AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA B_malayi_mito_clone2+ AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA B_malayi_mito_clone4+ AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA B_malayi_mito_clone3+ TAATACTAATACGCAAAGTTAAA ____________________________________________________________ consensus AAAATAGTAAATATTAAAAAATGACCAATCAAAAAAATAATACTAATACGCAAAGTTAAA . : . : . : . : . : . : B_malayi_mito_clone1- GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT B_malayi_mito_clone2+ GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT B_malayi_mito_clone7+ GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT B_malayi_mito_clone2+ GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT B_malayi_mito_clone4+ GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT B_malayi_mito_clone3+ GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT ____________________________________________________________ consensus GCCACACCACTCATCAAAAATCTTAACCAATGAGAAAAAAATATAACTAACCTAGAAACT . : . : . : . : . : . : B_malayi_mito_clone1- CATTCTCAAGAATGATCATCTTCA B_malayi_mito_clone2+ CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAGTAAAA B_malayi_mito_clone7+ CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAG B_malayi_mito_clone2+ CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAGTAAAA B_malayi_mito_clone4+ CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAGTAAAA B_malayi_mito_clone3+ CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAGTAAAA ____________________________________________________________ consensus CATTCTCAAGAATGATCATCTTCAAAACAAACCATAAACCTATCAATAGCCAAAGTAAAA . : . : . : . : . : . : B_malayi_mito_clone2+ GTACGGACTCCCAGTCAAGAAAAATTAGTAATAAAAAATAAAAAACCGACACTAGCCCAA B_malayi_mito_clone2+ GTACGGACTCCCAGTCAAGAAAAATTAGTA B_malayi_mito_clone4+ GTACGGACTCCCAGTCAAGAAAAATTAGTAATAAAAAATAAAAAACCGACACTAGCCCAA B_malayi_mito_clone3+ GTACGGACTCCCAGTCAAGAAAAATTAGTAATAAAAAATAAAAAACCGACACTAGCCCAA ____________________________________________________________ consensus GTACGGACTCCCAGTCAAGAAAAATTAGTAATAAAAAATAAAAAACCGACACTAGCCCAA . : . : . : . : . : . : B_malayi_mito_clone2+ GGACTAAATAATGGAAAAACCAACCCGCAAAATCAAAACATAGTAAGCTAGATTGAACAC B_malayi_mito_clone4+ GGACTAAATAATGGAAAAACCAACCCGCAAAATCAAAACATAGTAAGCTAGATTGAACAC B_malayi_mito_clone3+ GGACTAAATAATGGAAAAACCAACCCGCAAAATCAAAACATAGTAAGCTAGATTGAACAC B_malayi_mito_clone3+ CTAGATTGAACAC ____________________________________________________________ consensus GGACTAAATAATGGAAAAACCAACCCGCAAAATCAAAACATAGTAAGCTAGATTGAACAC . : . : . : . : . : . : B_malayi_mito_clone2+ CCTGATGGCTAAAACCACTCACTAAAAAATTAAAAAAATAACCCAAAAAACCTAGATAAC B_malayi_mito_clone4+ CCTGATGGCTAAAACCACTCACT B_malayi_mito_clone3+ CCTGATGGCTAAAACCACTCACTAAAAAATTAAAAAAATAACCCAAAAAACCTAGATAAC B_malayi_mito_clone3+ CCTGATGGCTAAAACCACTCACTAAAAAATTAAAAAAATAACCCAAAAAACCTAGATAAC B_malayi_mito_clone2- TAACCCAAAAAACCTAGATAAC ____________________________________________________________ consensus CCTGATGGCTAAAACCACTCACTAAAAAATTAAAAAAATAACCCAAAAAACCTAGATAAC . : . : . : . : . : . : B_malayi_mito_clone2+ CAAACTTCAACAACTCCATATAAAACAAATAAAACAGTATCAAAA B_malayi_mito_clone3+ CAAACTTCAACAACTCCATATAAAACAAATAAAACAGTATCAAAAATCAAATAATAAATA B_malayi_mito_clone3+ CAAACTTCAACAACTCCATATAAAACAAATAAAACAGTATCAAAAATCAAATAATAAATA B_malayi_mito_clone2- CAAACTTCAACAACTCCATATAAAACAAATAAAACAGTATCAAAAATCAAATAATAAATA ____________________________________________________________ consensus CAAACTTCAACAACTCCATATAAAACAAATAAAACAGTATCAAAAATCAAATAATAAATA . : . : . : . : . : . : B_malayi_mito_clone3+ ATAAAATCGCTTAAAAAACCTATATCTTTTCAAAATATTATTC B_malayi_mito_clone3+ ATAAAATCGCTTAAAAAACCTATATCTTTTCAAAATATTATTCTCTTATACCAAAAAACA B_malayi_mito_clone2- ATAAAATCGCTTAAAAAACCTATATCTTTTCAAAATATTATTCTCTTATACCAAAAAACA B_malayi_mito_clone8- TCTTATACCAAAAAACA B_malayi_mito_clone3- AAAAAACA ____________________________________________________________ consensus ATAAAATCGCTTAAAAAACCTATATCTTTTCAAAATATTATTCTCTTATACCAAAAAACA . : . : . : . : . : . : B_malayi_mito_clone3+ AACTAGAAGTTAAACAACTAAAATATAACAAATTGCCATATTCGCCCAAAAATAATGAGG B_malayi_mito_clone2- AACTAGAAGTTAAACAACTAAAATATAACAAATTGCCATATTCGCCCAAAAATAATGAGG B_malayi_mito_clone8- AACTAGAAGTTAAACAACTAAAATATAACAAATTGCCATATTCGCCCAAAAATAATGAGG B_malayi_mito_clone6+ AATTGCCATATTCGCCCAAAAATAATGAGG B_malayi_mito_clone3- AACTAGAAGTTAAACAACTAAAATATAACAAATTGCCATATTCGCCCAAAAATAATGAGG ____________________________________________________________ consensus AACTAGAAGTTAAACAACTAAAATATAACAAATTGCCATATTCGCCCAAAAATAATGAGG . : . : . : . : . : . : B_malayi_mito_clone3+ CAAAACCAACACTAGAATATTCAACATTAAAACCTCTAACTAGCTCTCTCTCACATTCAG B_malayi_mito_clone2- CAAAACCAACACTAGAATATTCAACATT B_malayi_mito_clone8- CAAAACCAACACTAGAATATTCAACATTAAAACCTCTAACTAGCTCTCTCTCACATTCAG B_malayi_mito_clone6+ CAAAACCAACACTAGAATATTCAACATTAAAACCTCTAACTAGCTCTCTCTCACATTCAG B_malayi_mito_clone3- CAAAACCAACACTAGAATATTCAACATTAAAACCTCTAACTAGCTCTCTCTCACATTCAG ____________________________________________________________ consensus CAAAACCAACACTAGAATATTCAACATTAAAACCTCTAACTAGCTCTCTCTCACATTCAG . : . : . : . : . : . : B_malayi_mito_clone3+ ACAAATCGAAAGGGGCACGATGTAAATCAATC B_malayi_mito_clone8- ACAAATCGAAAGGGGCACGATGTAAATCAATCAAAACTCTAAAAGACAAGCATAAACTCT B_malayi_mito_clone6+ ACAAATCGAAAGGGGCACGATGTAAATCAATCAAAACTCTAAAAGACAAGCATAAACTCT B_malayi_mito_clone3- ACAAATCGAAAGGGGCACGATGTAAATCAATCAAAACTCTAAAAGACAAGCATAAACTCT ____________________________________________________________ consensus ACAAATCGAAAGGGGCACGATGTAAATCAATCAAAACTCTAAAAGACAAGCATAAACTCT . : . : . : . : . : . : B_malayi_mito_clone8- TATTAAAAAGCAGAAAAATAAGTAAATAGACAGAAAAAGCAATTTCATAAGAATAACTTT B_malayi_mito_clone6+ TATTAAAAAGCAGAAAAATAAGTAAATAGACAGAAAAAGCAATTTCATAAGA B_malayi_mito_clone3- TATTAAAAAGCAGAAAAATAAGTAAATAGACAGAAAAAGCAATTTCATAAGAATAACTTT B_malayi_mito_clone4+ AAGCAATTTCATAAGAATAACTTT ____________________________________________________________ consensus TATTAAAAAGCAGAAAAATAAGTAAATAGACAGAAAAAGCAATTTCATAAGAATAACTTT . : . : . : . : . : . : B_malayi_mito_clone8- GAGCACAAGCCCGTAAACCACCAATAAAAGAATACTTACCACCACTAAAAATTCCAGATA B_malayi_mito_clone3- GAGCACAAGCCCGTAAACCACCAATAAAAGAATACTTACCACCACTAAAAATTCCAGATA B_malayi_mito_clone4+ GAGCACA-GCCCGTAAACCACCAATAAAAGAATACTTACCACCACTAAAAATTCCAGATA ____________________________________________________________ consensus GAGCACAAGCCCGTAAACCACCAATAAAAGAATACTTACCACCACTAAAAATTCCAGATA . : . : . : . : . : . : B_malayi_mito_clone8- GCATAATAAAATACGCAGAAACCCCCATTAAGC B_malayi_mito_clone3- GCATAATAAAATACGCAGAAACCCCCATTAAGCTTGGCTGTTCTTTCTTTAATAATTTAA B_malayi_mito_clone4+ GCATAATAAAATACGCAGAAACCCCCATTAAGC---GCTGTTCTTTCTTTAATAATTTAA B_malayi_mito_clone7- TTCTTTCTTTAATAATTTAA ____________________________________________________________ consensus GCATAATAAAATACGCAGAAACCCCCATTAAGCTTGGCTGTTCTTTCTTTAATAATTTAA . : . : . : . : . : . : B_malayi_mito_clone3- GACCATCAAACAACGCCTGAAAAATACCAGAGTAACCAACTTTATTGGGACCAATACGAC B_malayi_mito_clone4+ GACCATCAAACAACGCCTGAAAAATACCAGAGTAACCAACTTTATTGGGACCAATACGAC B_malayi_mito_clone7- GACCATCAAACAACGCCTGAAAAATACCAGAGTAACCAACTTTATTGGGACCAATACGAC ____________________________________________________________ consensus GACCATCAAACAACGCCTGAAAAATACCAGAGTAACCAACTTTATTGGGACCAATACGAC . : . : . : . : . : . : B_malayi_mito_clone3- ACTGAGTGCCACCCAAAAAATGACGTTCTATT B_malayi_mito_clone4+ ACTGAGTGCCACCCAAAAAATGACGTTCTATTAAAGTTAAAAAAGCAATGGCTTGCAAAG B_malayi_mito_clone7- ACTGAGTGCCACCCAAAAAATGACGTTCTATTAAAGTTAAAAAAGCAATGGCTTGCAAAG ____________________________________________________________ consensus ACTGAGTGCCACCCAAAAAATGACGTTCTATTAAAGTTAAAAAAGCAATGGCTTGCAAAG . : . : . : . : . : . : B_malayi_mito_clone4+ TAAAATCCAAAGAATTTAC--TTCTTTATTCTAATATAAACTAATACTTTAAAAAATAGA B_malayi_mito_clone7- TAAAATCCAAAGAATTTACAATTCTTTATTCTAATATAAACTAATACTTTAAAAAATAGA ____________________________________________________________ consensus TAAAATCCAAAGAATTTACAATTCTTTATTCTAATATAAACTAATACTTTAAAAAATAGA . : . : . : . : . : . : B_malayi_mito_clone4+ GACAAGTTTCCTTACCTCTACCATACTACAACTTACGCCCCTATAGGCCATTGACGGATG B_malayi_mito_clone7- GACAAGTTTCCTTACCTCTACCATACTACAACTTACGCCCCTATAGGCCATTGACGGATG ____________________________________________________________ consensus GACAAGTTTCCTTACCTCTACCATACTACAACTTACGCCCCTATAGGCCATTGACGGATG . : . : . : . : . : . : B_malayi_mito_clone4+ GTTTGTACCACTTTGCTTTCTTTTCCAATTTC B_malayi_mito_clone7- GTTTGTACCACTTTG ____________________________________________________________ consensus GTTTGTACCACTTTGCTTTCTTTTCCAATTTC ******************* Contig 6 ******************** . : . : . : . : . : . : B_malayi_mito_clone2- AATAATCAAAAAAACCTAATTACAAACTGAAATCAATCTTCTAATTACAAGTTAGAAATT B_malayi_mito_clone2+ TACAAACTGAAATCAATCTTCTAATTACAAGTTAGAAATT ____________________________________________________________ consensus AATAATCAAAAAAACCTAATTACAAACTGAAATCAATCTTCTAATTACAAGTTAGAAATT . : . : . : . : . : . : B_malayi_mito_clone2- TTCCCAACCATACTAGAAGTGCCAAACAATAACAAAACCTTCAAAAAAAAAGTTAAACTC B_malayi_mito_clone2+ TTCCCAACCATACTAGAAGTGCCAAACAATAACAAAACCTTCAAAAAAAAAGTTAAACTC ____________________________________________________________ consensus TTCCCAACCATACTAGAAGTGCCAAACAATAACAAAACCTTCAAAAAAAAAGTTAAACTC . : . : . : . : . : . : B_malayi_mito_clone2- AAAGGAACATTAAAAAAAATCATCAACATCTCTAAACTAATAAAATTAATACCACTATTA B_malayi_mito_clone2+ AAAGGAACATTAAAAAAAATCATCAACATCTCTAAACTAATAAAATTAATACCACTATTA ____________________________________________________________ consensus AAAGGAACATTAAAAAAAATCATCAACATCTCTAAACTAATAAAATTAATACCACTATTA . : . : . : . : . : . : B_malayi_mito_clone2- TAAATATAAGAAATAATT B_malayi_mito_clone2+ TAAATATAAGAAATAATT ____________________________________________________________ consensus TAAATATAAGAAATAATT ******************* Contig 7 ******************** . : . : . : . : . : . : B_malayi_mito_clone5- ATTTTTTGTTCTTTTTTTATTTGTCTTTTATATCTTTTATATGTTTCCTTTTTATGGATA ____________________________________________________________ consensus ATTTTTTGTTCTTTTTTTATTTGTCTTTTATATCTTTTATATGTTTCCTTTTTATGGATA . : . : . : . : . : . : B_malayi_mito_clone5- AAGGATGTCTTTTTGGAGGATGTCAGTGGTCAGTACTCTTTTTATGATTATCGGATATTT ____________________________________________________________ consensus AAGGATGTCTTTTTGGAGGATGTCAGTGGTCAGTACTCTTTTTATGATTATCGGATATTT . : . : . : . : . : . : B_malayi_mito_clone5- AGTCAAGGGTTTCGTTTATTTTTATTTAGTGAATTGACTTTATTTTTTTCTATTTTTTGA ____________________________________________________________ consensus AGTCAAGGGTTTCGTTTATTTTTATTTAGTGAATTGACTTTATTTTTTTCTATTTTTTGA . : . : . : . : . : . : B_malayi_mito_clone5- ACTTTTTTGGATTCTTCTCTGTGTCCTTTGACTTGGTTGGGTGGGGTTTGATCTCGTCCG ____________________________________________________________ consensus ACTTTTTTGGATTCTTCTCTGTGTCCTTTGACTTGGTTGGGTGGGGTTTGATCTCGTCCG . : . : . : . : . : . : B_malayi_mito_clone5- GCATTTTGTCTCCTGATTATTTAGGCATTAACGGTATGGCTAGTTTATTTTTAATAATAA B_malayi_mito_clone6+ GGCATTAACGGTATGGCTAGTTTATTTTTAATAATAA ____________________________________________________________ consensus GCATTTTGTCTCCTGATTATTTAGGCATTAACGGTATGGCTAGTTTATTTTTAATAATAA . : . : . : . : . : . : B_malayi_mito_clone5- ATAGTCAGGT B_malayi_mito_clone6+ ATAGTCAGGTTTTGAAGTACTCTCGACGTTATTTATGTTTAAATGTCAATAAGTGTGGGT ____________________________________________________________ consensus ATAGTCAGGTTTTGAAGTACTCTCGACGTTATTTATGTTTAAATGTCAATAAGTGTGGGT . : . : . : . : . : . : B_malayi_mito_clone6+ TCTTTTTTTTTATGTTTTCAATTTTTTGAGTATAGCCATAATTGTTTCGTAATGAATGAT ____________________________________________________________ consensus TCTTTTTTTTTATGTTTTCAATTTTTTGAGTATAGCCATAATTGTTTCGTAATGAATGAT . : . : . : . : . : . : B_malayi_mito_clone6+ AGAATTTATGGCAGAGTTTTTTATATCGGAACTGGTTTGCATGGAAGTCATGTATTGATT B_malayi_mito_clone4+ TGATT ____________________________________________________________ consensus AGAATTTATGGCAGAGTTTTTTATATCGGAACTGGTTTGCATGGAAGTCATGTATTGATT . : . : . : . : . : . : B_malayi_mito_clone6+ GGTGTTTGTTTTCTTATTGTTAATTTTTTTCGTGCTAAATTACATAATTTTAATTGGTAT B_malayi_mito_clone4+ GGTGTTTGTTTTCTTATTGTTAATTTTTTTCGTGCTAAATTACATAATTTTAATTGGTAT ____________________________________________________________ consensus GGTGTTTGTTTTCTTATTGTTAATTTTTTTCGTGCTAAATTACATAATTTTAATTGGTAT . : . : . : . : . : . : B_malayi_mito_clone6+ CATACTCAAGCTTATGATATGTCTATTGACTATTGACGGTTCTTAGAATGAATGTGAGGT B_malayi_mito_clone4+ CATACTCAAGCTTATGATATGTCTATTGACTATTGACGGTTCTTAGAATGAATGTGAGGT ____________________________________________________________ consensus CATACTCAAGCTTATGATATGTCTATTGACTATTGACGGTTCTTAGAATGAATGTGAGGT . : . : . : . : . : . : B_malayi_mito_clone6+ ATTATATTTTGTTTATTATATGTTTGAGGTTCTTAATTTTTAATTGTAAGATATCTGTTT B_malayi_mito_clone4+ ATTATATTTTGTTTATTATATGTTTGAGGTTCTTAATTTTTAATTGTAAGATATCTGTTT ____________________________________________________________ consensus ATTATATTTTGTTTATTATATGTTTGAGGTTCTTAATTTTTAATTGTAAGATATCTGTTT . : . : . : . : . : . : B_malayi_mito_clone6+ TACTTC B_malayi_mito_clone4+ TACTTCATTATTTTTTATAGCTTATTTTTAATGATGAGTACGTTCCAATTCTCAGAGTAT ____________________________________________________________ consensus TACTTCATTATTTTTTATAGCTTATTTTTAATGATGAGTACGTTCCAATTCTCAGAGTAT . : . : . : . : . : . : B_malayi_mito_clone4+ TATAACATTAAAGTTATAATACTCTGTTAGAATTGTATTTATTTAATAGACCAACTACTT ____________________________________________________________ consensus TATAACATTAAAGTTATAATACTCTGTTAGAATTGTATTTATTTAATAGACCAACTACTT . : . : . : . : . : . : B_malayi_mito_clone4+ AAATTACTAACTAAAGATTATTTTTTTACTATAGTGTATATATTATAAGTTATTATATTT ____________________________________________________________ consensus AAATTACTAACTAAAGATTATTTTTTTACTATAGTGTATATATTATAAGTTATTATATTT . : . : . : . : . : . : B_malayi_mito_clone4+ GATTTGCAATCTTAAGATTTTTATACACTATGGCTTTTTAGTATAATAAGTATATTCGTT ____________________________________________________________ consensus GATTTGCAATCTTAAGATTTTTATACACTATGGCTTTTTAGTATAATAAGTATATTCGTT . : . : . : . : . : . : B_malayi_mito_clone4+ TTAAGCGCGGCTGGTTTTAAGCTATTAGAATTTTA ____________________________________________________________ consensus TTAAGCGCGGCTGGTTTTAAGCTATTAGAATTTTA ******************* Contig 8 ******************** . : . : . : . : . : . : B_malayi_mito_clone1+ ACAAATACCTAAATAAGAATAACCACGGTAATCCTGGTTACCACAATTAATATAGATCAA ____________________________________________________________ consensus ACAAATACCTAAATAAGAATAACCACGGTAATCCTGGTTACCACAATTAATATAGATCAA . : . : . : . : . : . : B_malayi_mito_clone1+ ATACCCAATTTGCATAAATAATAAACTCTTAAAAAAAGAATGCCTAATTATATCAATAAA B_malayi_mito_clone1+ AAACTCTTAAAAAAAGAATGCCTAATTATATGAATAAA B_malayi_mito_clone1+ AAACTCTTAAAAAAAGAATGCCTAATTATATGAATAAA ____________________________________________________________ consensus ATACCCAATTTGCATAAATAATAAACTCTTAAAAAAAGAATGCCTAATTATATGAATAAA . : . : . : . : . : . : B_malayi_mito_clone1+ AGAAATATAATGTAACCCGCTACCAATAGCCAAAAAACAAAAACCAATTTGAGACATAGT B_malayi_mito_clone1+ AGAAATATAATGTAACCCGCTACCAATAGCCAAAAAACAAAAACCAATTTGAGACATAGT B_malayi_mito_clone1+ AGAAATATAATGTAACCCGCTACCAATAGCCAAAAAACAAAAACCAATTTGAGACATAGT ____________________________________________________________ consensus AGAAATATAATGTAACCCGCTACCAATAGCCAAAAAACAAAAACCAATTTGAGACATAGT . : . : . : . : . : . : B_malayi_mito_clone1+ GCTCAAAGCAACAACCTTCTTTGCATCCTGCTCAACCAGTGCGCATAATCCAGAAAAAAC B_malayi_mito_clone1+ GCTCAAAGCAACAACCTTCTTTGCATCCTGCTCAACCAGTGCGCATAATCCAGAAAAAAC B_malayi_mito_clone1+ GCTCAAAGCAACAACCTTCTTTGCATCCTGCTCAACCAGTGCGCATAATCCAGAAAA--C ____________________________________________________________ consensus GCTCAAAGCAACAACCTTCTTTGCATCCTGCTCAACCAGTGCGCATAATCCAGAAAAAAC . : . : . : . : . : . : B_malayi_mito_clone1+ TATAGTAAAAAACCCGACATAAAAAACAAAAGTCAAAACATCAGAATTTAAACAAACATA B_malayi_mito_clone1+ TATAGTAAAAAACCCGACATAAAAAACAAAAGTCAAAACATCAGAATTTAAACAAACATA B_malayi_mito_clone1+ TATAGTAAAAAACCCGACATAAAAAACAAAAGTCAAAACATCAGAATTTAAACAAACATA ____________________________________________________________ consensus TATAGTAAAAAACCCGACATAAAAAACAAAAGTCAAAACATCAGAATTTAAACAAACATA . : . : . : . : . : . : B_malayi_mito_clone1+ AAAATAACAATCCATCAACATAACGCCGGCAGTAACCAAAGTGCTACTATGAACTAAACA B_malayi_mito_clone1+ AAAATAACAATCCATCAACATAACGCCGGCAGTAACCAAAGTGCTACTATGAACTAAACA B_malayi_mito_clone1+ AAAATAACAATCCATCAACATAACGCCGGCAGTAACCAAAGTGCTACTATGAACTAAACA B_malayi_mito_clone4+ AAATAACAATCCATCAACATAACGCCGGCAGTAACCAAAGTGCTACTATGAACTAAACA ____________________________________________________________ consensus AAAATAACAATCCATCAACATAACGCCGGCAGTAACCAAAGTGCTACTATGAACTAAACA . : . : . : . : . : . : B_malayi_mito_clone1+ ACTAACAG B_malayi_mito_clone1+ ACTAACAGGAGTAGGGGCAGCTATGGCCTTAGGCAACCAACTGCCAAAAGGATATTGTCC B_malayi_mito_clone1+ ACTAACAGGAGTAGGGGCAGCTATGGCCTTAGGCAA B_malayi_mito_clone4+ ACTAACAGGAGTAGGGGCAGCTATGGCCTTAGGCAACCAACTGCCAAAAGGATATTGTCC ____________________________________________________________ consensus ACTAACAGGAGTAGGGGCAGCTATGGCCTTAGGCAACCAACTGCCAAAAGGATATTGTCC . : . : . : . : . : . : B_malayi_mito_clone1+ ACCCTT B_malayi_mito_clone4+ ACCCTTTCCCCAATACGATTAGTAAAAACAGTACTTATAGATCTACTACGAGAAACTACA ____________________________________________________________ consensus ACCCTTTCCCCAATACGATTAGTAAAAACAGTACTTATAGATCTACTACGAGAAACTACA . : . : . : . : . : . : B_malayi_mito_clone4+ TTATTATAAAACAAAACCAAAAAAAAACTACTAACACCCAAAAAATCCCAAAAAATTAAA B_malayi_mito_clone4- CCAAAAAATCCCAAAAAATTAAA B_malayi_mito_clone1- AATTAAA ____________________________________________________________ consensus TTATTATAAAACAAAACCAAAAAAAAACTACTAACACCCAAAAAATCCCAAAAAATTAAA . : . : . : . : . : . : B_malayi_mito_clone4+ ACTAAAATAATACTACCTCTAAAAACAATCAATCCACCTATTCTT B_malayi_mito_clone4- ACTAAAATAATACTACCTCTAAAAACAATCAATCCACCTATTCTTCGAGAAGCACCCTGC B_malayi_mito_clone1- ACTAAAATAATACTACCTCTAAAAACAATCAATCCACCTATTCTTCGAGAAGCACCCTGC ____________________________________________________________ consensus ACTAAAATAATACTACCTCTAAAAACAATCAATCCACCTATTCTTCGAGAAGCACCCTGC . : . : . : . : . : . : B_malayi_mito_clone4- ATATT B_malayi_mito_clone1- ATATTACCAGACAAATAATAAAAAAAGCTTAAAAACCCTTTTATCGTAAATAAAAAATTC B_malayi_mito_clone4- TACCAGACAAATAATAAAAAAAGCTTAAAAACCCTTTTATCGTAAATAAAAAATTC B_malayi_mito_clone1+ CCAGACAAATAATAAAAAAAGCTTAAAAACCCTTTTATCGTAAATAAAAAATTC B_malayi_mito_clone3+ CCCTTTTATCGTAAATAAAAAATTC ____________________________________________________________ consensus ATATTACCAGACAAATAATAAAAAAAGCTTAAAAACCCTTTTATCGTAAATAAAAAATTC . : . : . : . : . : . : B_malayi_mito_clone1- AAAAAATAAACTAAAA-GCTAAAAGACCAAAACCAGCTAACAGACAATAAGCTATACTAA B_malayi_mito_clone4- AAAAAATAAACTAAAAAGCTAAAAGACCAAAACCAGCTAACAGACAATAAGCTATACTAA B_malayi_mito_clone1+ AAAAAATAAACTAAAAAGCTAAAAGACCAAAACCAGCTAACAGACAATAAGCTATACTAA B_malayi_mito_clone3+ AAAAAATAAACTAAAAAGCTAAAAGACCAAAACCAGCTAACAGACAATAAGCTATACTAA ____________________________________________________________ consensus AAAAAATAAACTAAAAAGCTAAAAGACCAAAACCAGCTAACAGACAATAAGCTATACTAA . : . : . : . : . : . : B_malayi_mito_clone1- AATATACTAAATCTTTTAAAAAAAACTGAAAAAAA B_malayi_mito_clone4- AATATACTAAATCTTTTAAAAAAAACTGAAAAAAATCTAAAAGCCCCAAACATTTTATTT B_malayi_mito_clone1+ AATATACTAAATCTTTTAAAAAAAACTGAAAAAAA B_malayi_mito_clone3+ AATATACTAAATCTTTTAAAAAAAACTGAAAAAAATCTAAAAGCCCCAAACATTTTATTT ____________________________________________________________ consensus AATATACTAAATCTTTTAAAAAAAACTGAAAAAAATCTAAAAGCCCCAAACATTTTATTT . : . : . : . : . : . : B_malayi_mito_clone4- TAAAAATTAAACTAATTCAGCAAAGTTAAAGGCAAAACCTAAAAAAAGTTTTCAAAACTT B_malayi_mito_clone3+ TAAAAATTAAACTAATTCAGCAAAGTTAAAGGCAAAACCTAAAAAAAGTTTTCAAAACTT ____________________________________________________________ consensus TAAAAATTAAACTAATTCAGCAAAGTTAAAGGCAAAACCTAAAAAAAGTTTTCAAAACTT . : . : . : . : . : . : B_malayi_mito_clone4- AAAAAAAATTAACTCAAGGTTAAAAATCAAATGATCTGCAATCACCTATATTAAATTATA B_malayi_mito_clone3+ AAAAAAAATTAACTCAAGGTTAAAAATCAAATGATCTGCAATCACCTATATTAAATTATA ____________________________________________________________ consensus AAAAAAAATTAACTCAAGGTTAAAAATCAAATGATCTGCAATCACCTATATTAAATTATA . : . : . : . : . : . : B_malayi_mito_clone4- CTACAAACCTAAAAACATCACAATAACTTCCCAAAATACCATTCCAT B_malayi_mito_clone3+ CTACAAACCTAAAAACATCACAATAACTTCCCAAAATACCATTCCATAT ____________________________________________________________ consensus CTACAAACCTAAAAACATCACAATAACTTCCCAAAATACCATTCCATAT ******************* Contig 9 ******************** . : . : . : . : . : . : B_malayi_mito_clone2+ AGATTTTATTTAGTCTTCTAAACTATTTTTGGGTTTTACTCGTCGTGTGTTGGACTATAT ____________________________________________________________ consensus AGATTTTATTTAGTCTTCTAAACTATTTTTGGGTTTTACTCGTCGTGTGTTGGACTATAT . : . : . : . : . : . : B_malayi_mito_clone2+ TGTTTGATGGAGAGTTTTTGTTATCTGCACTTTTGTTTTTGTTTTATTTAACAATTGGTG B_malayi_mito_clone1+ TTAACAATTGGTG ____________________________________________________________ consensus TGTTTGATGGAGAGTTTTTGTTATCTGCACTTTTGTTTTTGTTTTATTTAACAATTGGTG . : . : . : . : . : . : B_malayi_mito_clone2+ GTGGTAGAACTTCTTGTTTAGTTAATTATTATGTTATTCAGGAGGTTTGTGGTTATTATT B_malayi_mito_clone1+ GTGGTAGAACTTCTTGTTTAGTTAATTATTATGTTATTCAGGAGGTTTGTGGTTATTATT ____________________________________________________________ consensus GTGGTAGAACTTCTTGTTTAGTTAATTATTATGTTATTCAGGAGGTTTGTGGTTATTATT . : . : . : . : . : . : B_malayi_mito_clone2+ TTTTGGTTTTTGATAGTTGGAAATTTCAGTTTTTTTT B_malayi_mito_clone1+ TTTTGGTTTT ____________________________________________________________ consensus TTTTGGTTTTTGATAGTTGGAAATTTCAGTTTTTTTT
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