Genomes and Genomics 3 2008

PRACTICAL | TECH SESSIONS | LECTURES

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PRACTICAL 2008: EST sequencing from Heligmosomoides polygyrus PRACTICAL SCHEDULE PDF INTRODUCTION: ESTs PDF H. polygyrus a model nematode Henry McSorley's Talk (PowerPoint) Computer Practical 1 Practical Results 2008 Computer Practical 1 Talk PDF Computer Practical 2 Practical Analysis 2008 Computer Practcal 2 Talk PDF Writeup Instructions instructions for the writeup: hand in date is 4pm Thursday 6th March 2008.

TECH SESSIONS 2008

Technical Session 1: Sequencing Genomes | Lecture Notes PDF | SOLEXA and 454 sequencing - an introduction PDF | Practical Notes html

Technical Session 4: Gene Finding | Lecture Notes PDF | Practical Notes html

Technical Session 7: Molecular Phylogenetics | Lecture Notes PDF | Practical Notes html

Technical Session 8: Genome Databases | Lecture Notes PDF | Practical Notes html | HOX_genes.pdf

LECTURES 2008
Sequencing Strategies and Primary Analysis	PDF of lecture notes (2007 version)
The genomes of the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe	PDF of lecture notes (2007 version)
The genome of the nematode Caenorhabditis elegans	PDF of lecture notes (2007 version) The C. elegans Genome. A more in depth view... The C. elegans ORFeome
The genome of Drosophila melanogaster	PDF of lecture notes (2007 version) The reannotation of the Drosophila melanogaster genome based on completion of the sequence in 2003.
The genomes of parasitic protozoa: Plasmodium falciparum and Trypanosoma brucei	PDF of lecture notes (2007 version)
The genome of Homo sapiens	PDF of lecture notes (2007 version) The human genome papers Publicly Funded Project Celera Project The Mouse Genome

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Other Genomes, Other Sites

Some links to other genome projects that may be of interest

Human Genome Links	The TIGR Microbial Genome Database
Plant Genomics	Parasite Genomes
Genomes On Line Database GOLD 2.0 at the EBI	GOLD 1.0 at the Univ. Illinois

The Sanger Institute: the premier UK genome sequencing centre with projects on bacteria, protozoa, C. elegans, fugu (puffer fish) and human genomes (amongst others)
The Washington University High Throughput Genome Sequencing Center: A US counterpart of the Sanger Institute with a major involvement in ESTs, human, mouse and C. elegans (amongst others)
The Institute for Genomic Research (TIGR): a not-for-profit genome sequencing institute involved in bacterial, Arabidopsis, malaria and T. brucei sequencing (amongst others)